RNA-dependent genome processing during nuclear differentiation: the model systems of stichotrichous ciliates

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

(2013) Estienne C. Swart et al.   PLOS BIOLOGY

Piwi-Interacting RNAs Protect DNA against Loss during Oxytricha Genome Rearrangement

(2012) Wenwen Fang et al.   CELL

Copy number variations of 11 macronuclear chromosomes and their gene expression in Oxytricha trifallax

(2012) Ke Xu et al.   GENE

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus

(2012) Alan M. Zahler et al.   PLoS One

Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts

(2012) Marco Magistri et al.   TRENDS IN GENETICS

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax

(2012) John R Bracht et al.   GENOME BIOLOGY

RNA-Mediated Epigenetic Programming of Genome Rearrangements

(2011) Mariusz Nowacki et al.   Annual Review of Genomics and Human Genetics

Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development

(2011) Philip J. Stephens et al.   CELL

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

Ribosomal RNA genes in Euglena gracilis mitochondrial DNA: fragmented genes in a seemingly fragmented genome

(2010) David F. Spencer et al.   MOLECULAR GENETICS AND GENOMICS

RNA-mediated epigenetic regulation of DNA copy number

(2010) M. Nowacki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-dependent control of gene amplification

(2010) G. Heyse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA rearrangements directed by non-coding RNAs in ciliates

(2010) Kazufumi Mochizuki   Wiley Interdisciplinary Reviews-RNA

The Unusual Way to Make a Genetically Active Nucleus

(2009) Franziska Jönsson et al.   DNA AND CELL BIOLOGY

Developmental genome rearrangements in ciliates: a natural genomic subtraction mediated by non-coding transcripts

(2009) Sandra Duharcourt et al.   TRENDS IN GENETICS

The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members

(2008) T. A. Farazi et al.   DEVELOPMENT

Resistance to therapy caused by intragenic deletion in BRCA2

(2008) Stacey L. Edwards et al.   NATURE

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

(2008) Peter J Campbell et al.   NATURE GENETICS

The Pathway to Detangle a Scrambled Gene

(2008) Matthias Möllenbeck et al.   PLoS One

A Neoplastic Gene Fusion Mimics Trans-Splicing of RNAs in Normal Human Cells

(2008) H. Li et al.   SCIENCE

Spatial and temporal plasticity of chromatin during programmed DNA-reorganization in Stylonychia macronuclear development

(2008) Jan Postberg et al.   Epigenetics & Chromatin