The Role of Clonal Interference in the Evolutionary Dynamics of Plasmid-Host Adaptation

Roles of Long and Short Replication Initiation Proteins in the Fate of IncP-1 Plasmids

(2012) H. Yano et al.   JOURNAL OF BACTERIOLOGY

Genetic Variation and the Fate of Beneficial Mutations in Asexual Populations

(2011) Gregory I. Lang et al.   GENETICS

Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture

(2011) R. Nahku et al.   MICROBIOLOGY-SGM

VARiD: A variation detection framework for color-space and letter-space platforms

(2010) A. V. Dalca et al.   BIOINFORMATICS

Mutational Effects and Population Dynamics During Viral Adaptation Challenge Current Models

(2010) C. R. Miller et al.   GENETICS

Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein

(2010) Masahiro Sota et al.   ISME Journal

Genomewide Patterns of Substitution in Adaptively Evolving Populations of the RNA Bacteriophage MS2

(2009) A. J. Betancourt   GENETICS

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Conjugative plasmids: vessels of the communal gene pool

(2009) A. Norman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage φX174

(2008) Kim M Pepin et al.   BMC EVOLUTIONARY BIOLOGY

Adaptive Plasmid Evolution Results in Host-Range Expansion of a Broad-Host-Range Plasmid

(2008) L. De Gelder et al.   GENETICS

Clonal Interference, Multiple Mutations and Adaptation in Large Asexual Populations

(2008) C. A. Fogle et al.   GENETICS

Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing

(2008) Chad Nusbaum et al.   NATURE METHODS