Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus

Abscisic acid (ABA) regulates grape bud dormancy, and dormancy release stimuli may act through modification of ABA metabolism

(2015) Chuanlin Zheng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network

(2015) Sunchung Park et al.   PLANT JOURNAL

Organogenesis in plants: initiation and elaboration of leaves

(2015) Aaron Sluis et al.   TRENDS IN GENETICS

De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes

(2015) Yevgen Zolotarov et al.   PLoS One

Consequences of induced brassinosteroid deficiency in Arabidopsis leaves

(2014) Florian Schröder et al.   BMC PLANT BIOLOGY

A Tree Ortholog of APETALA1 Mediates Photoperiodic Control of Seasonal Growth

(2014) Abdul Azeez et al.   CURRENT BIOLOGY

Regulation of Plant Stem Cell Quiescence by a Brassinosteroid Signaling Module

(2014) Josep Vilarrasa-Blasi et al.   DEVELOPMENTAL CELL

Genome-wide identification and characterization of the Populus WRKY transcription factor family and analysis of their expression in response to biotic and abiotic stresses

(2014) Yuanzhong Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene regulatory cascade of senescence-associated NAC transcription factors activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in Arabidopsis

(2014) Hyo Jung Kim et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression patterns and a novel interaction factor of Damaged DNA Binding Protein 1A (DDB1A) and DDB1B in Arabidopsis thaliana

(2014) Pei Hou et al.   JOURNAL OF PLANT BIOLOGY

Progressive promoter element combinations classify conserved orthogonal plant circadian gene expression modules

(2014) S. P. Smieszek et al.   Journal of the Royal Society Interface

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

The transcript elongation factor SPT4/SPT5 is involved in auxin-related gene expression in Arabidopsis

(2014) Julius Dürr et al.   NUCLEIC ACIDS RESEARCH

Roles of Gibberellin Catabolism and Signaling in Growth and Physiological Response to Drought and Short-Day Photoperiods in Populus Trees

(2014) Christine Zawaski et al.   PLoS One

The Relationship between the Expression of Ethylene-Related Genes and Papaya Fruit Ripening Disorder Caused by Chilling Injury

(2014) Yuan Zou et al.   PLoS One

Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression

(2014) D. A. Korasick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EARLY BUD-BREAK 1 (EBB1) is a regulator of release from seasonal dormancy in poplar trees

(2014) Yordan S. Yordanov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The DET1-COP1-HY5 Pathway Constitutes a Multipurpose Signaling Module Regulating Plant Photomorphogenesis and Thermomorphogenesis

(2014) Carolin Delker et al.   Cell Reports

Arabidopsis Polycomb Repressive Complex 2 binding sites contain putative GAGA factor binding motifs within coding regions of genes

(2013) Weiwei Deng et al.   BMC GENOMICS

Molecular characterization of a putative plant homolog of MBD4 DNA glycosylase

(2013) Ángel Ramiro-Merina et al.   DNA REPAIR

Remodelling chromatin to shape development of plants

(2013) Matthew Gentry et al.   EXPERIMENTAL CELL RESEARCH

Evidence of oxidative attenuation of auxin signalling

(2013) Wendy Ann Peer et al.   JOURNAL OF EXPERIMENTAL BOTANY

A genome-wide screen for ethylene-induced Ethylene Response Factors (ERFs) in hybrid aspen stem identifiesERFgenes that modify stem growth and wood properties

(2013) Jorma Vahala et al.   NEW PHYTOLOGIST

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis

(2013) Shivakumar Sreeramulu et al.   PLANT JOURNAL

Genome-wide expression profiles of seasonal bud dormancy at four critical stages in Japanese apricot

(2013) Wenjun Zhong et al.   PLANT MOLECULAR BIOLOGY

A systems biology perspective on the role of WRKY transcription factors in drought responses in plants

(2013) Prateek Tripathi et al.   PLANTA

ParSOC1, a MADS-box gene closely related to Arabidopsis AGL20/SOC1, is expressed in apricot leaves in a diurnal manner and is linked with chilling requirements for dormancy break

(2013) Taly Trainin et al.   Tree Genetics & Genomes

Wheels within wheels: the plant circadian system

(2013) Polly Yingshan Hsu et al.   TRENDS IN PLANT SCIENCE

BAC Library Development and Clone Characterization for Dormancy-Responsive DREB4A, DAM, and FT from Leafy Spurge (Euphorbia esula) Identifies Differential Splicing and Conserved Promoter Motifs

(2013) David P. Horvath et al.   WEED SCIENCE

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Adaptation to seasonality and the winter freeze

(2013) Jill C. Preston et al.   Frontiers in Plant Science

The Spt4–Spt5 complex: A multi-faceted regulator of transcription elongation

(2012) Grant A. Hartzog et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

(2012) Kelly J Vining et al.   BMC GENOMICS

SHORT VEGETATIVE PHASE (SVP) protein negatively regulates miR172 transcription via direct binding to the pri-miR172a promoter inArabidopsis

(2012) Hyun Jung Cho et al.   FEBS LETTERS

Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa

(2012) Hongsheng He et al.   PLANT CELL REPORTS

Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis

(2012) Zhen Tao et al.   PLANT JOURNAL

AtMYB14 Regulates Cold Tolerance in Arabidopsis

(2012) Yan Chen et al.   PLANT MOLECULAR BIOLOGY REPORTER

The CHD3 Remodeler PICKLE Associates with Genes Enriched for Trimethylation of Histone H3 Lysine 27

(2012) H. Zhang et al.   PLANT PHYSIOLOGY

EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development

(2012) Sang Yeol Kim et al.   PLoS Genetics

Auxin, cytokinin and the control of shoot branching

(2011) Dörte Müller et al.   ANNALS OF BOTANY

Arabidopsis HDA6 is required for freezing tolerance

(2011) Taiko Kim To et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

(2011) Betty Pelgas et al.   BMC GENOMICS

The Arabidopsis CUL4-DDB1 complex interacts with MSI1 and is required to maintainMEDEAparental imprinting

(2011) Eva Dumbliauskas et al.   EMBO JOURNAL

Expressional regulation of PpDAM5 and PpDAM6, peach (Prunus persica) dormancy-associated MADS-box genes, by low temperature and dormancy-breaking reagent treatment

(2011) H. Yamane et al.   JOURNAL OF EXPERIMENTAL BOTANY

SPT6L Encoding a Putative WG/GW-Repeat Protein Regulates Apical–Basal Polarity of Embryo in Arabidopsis

(2011) Xiao-Lu Gu et al.   Molecular Plant

Tissue-specific expression of Populus C19 GA 2-oxidases differentially regulate above- and below-ground biomass growth through control of bioactive GA concentrations

(2011) Jiqing Gou et al.   NEW PHYTOLOGIST

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner

(2011) Carmen Leida et al.   NEW PHYTOLOGIST

The Gene Ontology: enhancements for 2011

(2011)   NUCLEIC ACIDS RESEARCH

Analysis of global changes in gene expression during activity-dormancy cycle in hybrid aspen apex

(2011) Anna Karlberg et al.   Plant Biotechnology

Chilling of Dormant Buds HyperinducesFLOWERING LOCUS Tand Recruits GA-Inducible 1,3-β-Glucanases to Reopen Signal Conduits and Release Dormancy inPopulus

(2011) Päivi L.H. Rinne et al.   PLANT CELL

HDA6 Directly Interacts with DNA Methyltransferase MET1 and Maintains Transposable Element Silencing in Arabidopsis

(2011) X. Liu et al.   PLANT PHYSIOLOGY

Functional and Expressional Analyses of PmDAM Genes Associated with Endodormancy in Japanese Apricot

(2011) Ryuta Sasaki et al.   PLANT PHYSIOLOGY

Ectopic expression of a novel peach (Prunus persica) CBF transcription factor in apple (Malus × domestica) results in short-day induced dormancy and increased cold hardiness

(2011) Michael Wisniewski et al.   PLANTA

Activity-dormancy transition in the cambial meristem involves stage-specific modulation of auxin response in hybrid aspen

(2011) K. Baba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MSI4/FVE interacts with CUL4-DDB1 and a PRC2-like complex to control epigenetic regulation of flowering time in Arabidopsis

(2011) M. Pazhouhandeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

(2011) C.-Y. Hsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis

(2011) Z. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temperature signals contribute to the timing of photoperiodic growth cessation and bud set in poplar

(2011) A. Rohde et al.   TREE PHYSIOLOGY

Arabidopsis HDA6 Regulates Locus-Directed Heterochromatin Silencing in Cooperation with MET1

(2011) Taiko Kim To et al.   PLoS Genetics

Brassinosteroid-mediated stress tolerance in Arabidopsis shows interactions with abscisic acid, ethylene and salicylic acid pathways

(2010) Uday K Divi et al.   BMC PLANT BIOLOGY

Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant

(2010) Sergio Jiménez et al.   BMC PLANT BIOLOGY

Regulation and function of SOC1, a flowering pathway integrator

(2010) J. Lee et al.   JOURNAL OF EXPERIMENTAL BOTANY

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bud set in poplar - genetic dissection of a complex trait in natural and hybrid populations

(2010) Antje Rohde et al.   NEW PHYTOLOGIST

Genome-wide computational identification of WG/GW Argonaute-binding proteins in Arabidopsis

(2010) Wojciech M. Karlowski et al.   NUCLEIC ACIDS RESEARCH

The sprout inhibitors chlorpropham and 1,4-dimethylnaphthalene elicit different transcriptional profiles and do not suppress growth through a prolongation of the dormant state

(2010) Michael A. Campbell et al.   PLANT MOLECULAR BIOLOGY

Alteration of PHYA expression change circadian rhythms and timing of bud set in Populus

(2010) Iwanka Kozarewa et al.   PLANT MOLECULAR BIOLOGY

Low temperatures impact dormancy status, flowering competence, and transcript profiles in crown buds of leafy spurge

(2010) Münevver Doğramacı et al.   PLANT MOLECULAR BIOLOGY

Light and temperature sensing and signaling in induction of bud dormancy in woody plants

(2010) Jorunn E. Olsen   PLANT MOLECULAR BIOLOGY

Characterization, expression and function of DORMANCY ASSOCIATED MADS-BOX genes from leafy spurge

(2010) David P. Horvath et al.   PLANT MOLECULAR BIOLOGY

Components Acting Downstream of Short Day Perception Regulate Differential Cessation of Cambial Activity and Associated Responses in Early and Late Clones of Hybrid Poplar

(2010) L. Resman et al.   PLANT PHYSIOLOGY

Circadian Clock Components Regulate Entry and Affect Exit of Seasonal Dormancy as Well as Winter Hardiness in Populus Trees

(2010) C. Ibanez et al.   PLANT PHYSIOLOGY

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression

(2010) Lei Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene networks controlling the initiation of flower development

(2010) Frank Wellmer et al.   TRENDS IN GENETICS

Nuclear functions of the HMG proteins

(2009) Raymond Reeves   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The evolution of nuclear auxin signalling

(2009) Ivan A Paponov et al.   BMC EVOLUTIONARY BIOLOGY

A rapid transcriptional activation is induced by the dormancy-breaking chemical hydrogen cyanamide in kiwifruit (Actinidia deliciosa) buds

(2009) Eric F. Walton et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ectopic expression of miR396 suppressesGRFtarget gene expression and alters leaf growth inArabidopsis

(2009) Dongmei Liu et al.   PHYSIOLOGIA PLANTARUM

Crosstalk between Cold Response and Flowering in Arabidopsis Is Mediated through the Flowering-Time Gene SOC1 and Its Upstream Negative Regulator FLC

(2009) E. Seo et al.   PLANT CELL

A role for circadian evening elements in cold-regulated gene expression in Arabidopsis

(2009) Michael D. Mikkelsen et al.   PLANT JOURNAL

Gene-expression profiling of grape bud response to two alternative dormancy-release stimuli expose possible links between impaired mitochondrial activity, hypoxia, ethylene-ABA interplay and cell enlargement

(2009) Ron Ophir et al.   PLANT MOLECULAR BIOLOGY

Common mechanisms regulate flowering and dormancy

(2009) David Horvath   PLANT SCIENCE

Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.)

(2008) David P Horvath et al.   BMC GENOMICS

Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break

(2008) Kathy Mathiason et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

HDA6 is required for jasmonate response, senescence and flowering in Arabidopsis

(2008) K. Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

CENL1 Expression in the Rib Meristem Affects Stem Elongation and the Transition to Dormancy in Populus

(2008) R. Ruonala et al.   PLANT CELL

Two New Clock Proteins, LWD1 and LWD2, Regulate Arabidopsis Photoperiodic Flowering

(2008) J.-F. Wu et al.   PLANT PHYSIOLOGY

Similar mechanisms might be triggered by alternative external stimuli that induce dormancy release in grape buds

(2008) Tamar Halaly et al.   PLANTA

Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb Repressive Complex 2 Components

(2008) Danhua Jiang et al.   PLoS One

A PHD-Polycomb Repressive Complex 2 triggers the epigenetic silencing of FLC during vernalization

(2008) F. De Lucia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation

(2008) Douglas Gary Bielenberg et al.   Tree Genetics & Genomes

A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth

(2008) Todd P Michael et al.   PLOS BIOLOGY

Interaction of photoperiod and temperature in the control of growth and dormancy of Prunus species

(2007) Ola M. Heide   SCIENTIA HORTICULTURAE