Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications play a key role in polyploid genome evolution
出版年份 2015 全文链接
标题
Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications play a key role in polyploid genome evolution
作者
关键词
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出版物
Frontiers in Plant Science
Volume 6, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2015-10-09
DOI
10.3389/fpls.2015.00836
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Consistent and Heritable Alterations of DNA Methylation Are Induced by Tissue Culture in Maize
- (2014) Scott C. Stelpflug et al. GENETICS
- Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
- (2014) M. R. Woodhouse et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome
- (2014) B. Chalhoub et al. SCIENCE
- The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
- (2014) Shengyi Liu et al. Nature Communications
- Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
- (2014) Isobel AP Parkin et al. GENOME BIOLOGY
- Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus
- (2013) Xun Chen et al. BMC GENOMICS
- Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa
- (2013) Chaobo Tong et al. BMC GENOMICS
- Epigenetics and plant genome evolution
- (2013) Concepcion M Diez et al. CURRENT OPINION IN PLANT BIOLOGY
- Genome-Wide Analysis of DNA Methylation in Soybean
- (2013) Qing-Xin Song et al. Molecular Plant
- Deciphering the Diploid Ancestral Genome of the MesohexaploidBrassica rapa
- (2013) Feng Cheng et al. PLANT CELL
- Analysis of genomic DNA methylation patterns in regenerated and control plants of rye (Secale cereale L.)
- (2013) A. I. González et al. PLANT GROWTH REGULATION
- Cytoplasmic and Genomic Effects on Non-Meiosis-Driven Genetic Changes in Brassica Hybrids and Allotetraploids from Pairwise Crosses of Three Cultivated Diploids
- (2013) Cheng Cui et al. PLoS One
- Plants regenerated from tissue culture contain stable epigenome changes in rice
- (2013) Hume Stroud et al. eLife
- Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
- (2012) Xin Li et al. BMC GENOMICS
- Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy
- (2012) H. Tang et al. GENETICS
- Cytoplasmic and Genomic Effects on Meiotic Pairing in Brassica Hybrids and Allotetraploids from Pair Crosses of Three Cultivated Diploids
- (2012) Cheng Cui et al. GENETICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- Regulation and function of DNA methylation in plants and animals
- (2011) Xin-Jian He et al. CELL RESEARCH
- Epigenetic QTL Mapping inBrassica napus
- (2011) Yan Long et al. GENETICS
- Genetic and epigenetic relationship in rye, Secale cereale L., somaclonal variation within somatic embryo-derived plants
- (2011) Rosario Linacero et al. IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- The genome of the mesopolyploid crop species Brassica rapa
- (2011) Xiaowu Wang et al. NATURE GENETICS
- Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling
- (2011) Hongcang Gu et al. Nature Protocols
- Journey through the past: 150 million years of plant genome evolution
- (2011) Sebastian Proost et al. PLANT JOURNAL
- Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize
- (2011) James C. Schnable et al. PLoS One
- Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
- (2011) J. C. Schnable et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The collapse of gene complement following whole genome duplication
- (2010) David Sankoff et al. BMC GENOMICS
- Dynamic changes in the human methylome during differentiation
- (2010) L. Laurent et al. GENOME RESEARCH
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- The first meiosis of resynthesized Brassica napus, a genome blender
- (2010) E. Szadkowski et al. NEW PHYTOLOGIST
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs
- (2010) Margaret R. Woodhouse et al. PLOS BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- (2008) Shawn J. Cokus et al. NATURE
- The CACTA transposonBot1played a major role inBrassicagenome divergence and gene proliferation
- (2008) Karine Alix et al. PLANT JOURNAL
- Limited tissue culture-induced mutations and linked epigenetic modifications in F1hybrids of sorghum pure lines are accompanied by increased transcription of DNA methyltransferases and 5-methylcytosine glycosylases
- (2008) Meishan Zhang et al. PLANT JOURNAL
- Epigenomic Consequences of Immortalized Plant Cell Suspension Culture
- (2008) Milos Tanurdzic et al. PLOS BIOLOGY
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