Comparative Transcriptome Analysis of Resistant and Susceptible Tomato Lines in Response to Infection by Xanthomonas perforans Race T3

Effector-Triggered Immunity: From Pathogen Perception to Robust Defense

(2015) Haitao Cui et al.   Annual Review of Plant Biology

Transcriptome analysis of the compatible interaction of tomato with Verticillium dahliae using RNA-sequencing

(2015) Guangxuan Tan et al.   Frontiers in Plant Science

A comparison of disease severity measurements using image analysis and visual estimates using a category scale for genetic analysis of resistance to bacterial spot in tomato

(2014) Huijun Sun et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Identification of Genes Differentially Expressed between Resistant and Susceptible Tomato Lines during Time-Course Interactions with Xanthomonas perforans Race T3

(2014) Heshan Du et al.   PLoS One

Insights into organ-specific pathogen defense responses in plants: RNA-seq analysis of potato tuber-Phytophthora infestans interactions

(2013) Liangliang Gao et al.   BMC GENOMICS

Whole transcriptome sequencing reveals genes involved in plastid/chloroplast division and development are regulated by the HP1/DDB1 at an early stage of tomato fruit development

(2013) Xiaofeng Tang et al.   PLANTA

Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4

(2012) Chun-yu Li et al.   BMC GENOMICS

New evidences about strictosidine synthase (Str) regulation by salinity, cold stress and nitric oxide in Catharanthus roseus

(2012) Ajaswrata Dutta et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum

(2012) Shengxiong Huang et al.   MOLECULAR GENETICS AND GENOMICS

RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome

(2012) T. Strauss et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716

(2012) Molly Sharlach et al.   THEORETICAL AND APPLIED GENETICS

RNA-Seq Analysis of a Soybean Near-Isogenic Line Carrying Bacterial Leaf Pustule-Resistant and -Susceptible Alleles

(2011) K. H. Kim et al.   DNA RESEARCH

Molecular Mapping of Hypersensitive Resistance from Tomato ‘Hawaii 7981’ toXanthomonas perforansRace T3

(2011) Hui Wang et al.   PHYTOPATHOLOGY

Fine mapping and analysis of a candidate gene in tomato accession PI128216 conferring hypersensitive resistance to bacterial spot race T3

(2011) Chengcheng Pei et al.   THEORETICAL AND APPLIED GENETICS

Differential innate immune signalling via Ca2+ sensor protein kinases

(2010) Marie Boudsocq et al.   NATURE

WRKY72-type transcription factors contribute to basal immunity in tomato and Arabidopsis as well as gene-for-gene resistance mediated by the tomato R gene Mi-1

(2010) Kishor K. Bhattarai et al.   PLANT JOURNAL

Durability of Resistance in Tomato and Pepper to Xanthomonads Causing Bacterial Spot

(2009) Robert E. Stall et al.   Annual Review of Phytopathology

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The Pepper Calmodulin GeneCaCaM1Is Involved in Reactive Oxygen Species and Nitric Oxide Generation Required for Cell Death and the Defense Response

(2009) Hyong Woo Choi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection

(2009) Ian T. Major et al.   PHOTOSYNTHESIS RESEARCH

Characterization of Hypersensitive Resistance to Bacterial Spot Race T3 (Xanthomonas perforans) from Tomato Accession PI 128216

(2009) Matthew D. Robbins et al.   PHYTOPATHOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS