Long-term forest soil warming alters microbial communities in temperate forest soils

Soil carbon sensitivity to temperature and carbon use efficiency compared across microbial-ecosystem models of varying complexity

(2014) Jianwei Li et al.   BIOGEOCHEMISTRY

EctomycorrhizalCortinariusspecies participate in enzymatic oxidation of humus in northern forest ecosystems

(2014) Inga T. M. Bödeker et al.   NEW PHYTOLOGIST

Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics

(2013) Chengwei Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Availability of public goods shapes the evolution of competing metabolic strategies

(2013) H. Bachmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal variation in functional properties of microbial communities in beech forest soil

(2013) Marianne Koranda et al.   SOIL BIOLOGY & BIOCHEMISTRY

The temperature response of soil microbial efficiency and its feedback to climate

(2013) Serita D. Frey et al.   Nature Climate Change

Mapping the niche space of soil microorganisms using taxonomy and traits

(2012) Jay T. Lennon et al.   ECOLOGY

Effects of season and experimental warming on the bacterial community in a temperate mountain forest soil assessed by 16S rRNA gene pyrosequencing

(2012) Melanie Kuffner et al.   FEMS MICROBIOLOGY ECOLOGY

The effect of experimental warming and precipitation change on proteolytic enzyme activity: positive feedbacks to nitrogen availability are not universal

(2012) Edward R. Brzostek et al.   GLOBAL CHANGE BIOLOGY

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

METAGENassist: a comprehensive web server for comparative metagenomics

(2012) D. Arndt et al.   NUCLEIC ACIDS RESEARCH

Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere ofQuercus ilexin a mixed Mediterranean forest

(2012) J. Peñuelas et al.   PLANT BIOLOGY

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Actinobacterial Peroxidases: an Unexplored Resource for Biocatalysis

(2011) Marilize le Roes-Hill et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Integrating microbial ecology into ecosystem models: challenges and priorities

(2011) Kathleen K. Treseder et al.   BIOGEOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Functional genomics analysis of plant growth-promoting rhizobacterial traits involved in rhizosphere competence

(2011) Matthieu Barret et al.   BIOLOGY AND FERTILITY OF SOILS

The Dual Arrhenius and Michaelis-Menten kinetics model for decomposition of soil organic matter at hourly to seasonal time scales

(2011) Eric A. Davidson et al.   GLOBAL CHANGE BIOLOGY

Temperature and soil organic matter decomposition rates - synthesis of current knowledge and a way forward

(2011) Richard T. Conant et al.   GLOBAL CHANGE BIOLOGY

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

(2011) Jeffrey J Werner et al.   ISME Journal

Effect of warming and drought on grassland microbial communities

(2011) Cody S Sheik et al.   ISME Journal

Improvement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa

(2011) Tristano Bacchetti De Gregoris et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Persistence of soil organic matter as an ecosystem property

(2011) Michael W. I. Schmidt et al.   NATURE

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

A meta-analysis of responses of soil biota to global change

(2011) Joseph C. Blankinship et al.   OECOLOGIA

Soil warming alters nitrogen cycling in a New England forest: implications for ecosystem function and structure

(2011) S. M. Butler et al.   OECOLOGIA

Identification of active bacteria involved in decomposition of complex maize and soybean residues in a tropical Vertisol using 15N-DNA stable isotope probing

(2011) Mingrelia España et al.   PEDOBIOLOGIA

Soil warming, carbon-nitrogen interactions, and forest carbon budgets

(2011) J. M. Melillo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental warming effects on the microbial community of a temperate mountain forest soil

(2011) A. Schindlbacher et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial mediation of carbon-cycle feedbacks to climate warming

(2011) Jizhong Zhou et al.   Nature Climate Change

Seasonal dynamics of soil respiration and N mineralization in chronically warmed and fertilized soils

(2011) A. R. Contosta et al.   Ecosphere

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Influence of Plant Polymers on the Distribution and Cultivation of Bacteria in the PhylumAcidobacteria

(2010) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Microbial communities acclimate to recurring changes in soil redox potential status

(2010) Kristen M. DeAngelis et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of terrestrial ecosystems to temperature and precipitation change: a meta-analysis of experimental manipulation

(2010) ZHUOTING WU et al.   GLOBAL CHANGE BIOLOGY

Soil-carbon response to warming dependent on microbial physiology

(2010) Steven D. Allison et al.   Nature Geoscience

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Fate of lignins in soils: A review

(2010) Mathieu Thevenot et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Microbial Community Responses to Multiple Experimental Climate Change Drivers

(2009) H. F. Castro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Searching for unifying principles in soil ecology

(2009) Noah Fierer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phenol oxidase, peroxidase and organic matter dynamics of soil

(2009) Robert L. Sinsabaugh   SOIL BIOLOGY & BIOCHEMISTRY

Thermal adaptation of soil microbial respiration to elevated temperature

(2008) Mark A. Bradford et al.   ECOLOGY LETTERS

Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil

(2008) Hannah Toberman et al.   FEMS MICROBIOLOGY ECOLOGY

Terrestrial ecosystem carbon dynamics and climate feedbacks

(2008) Martin Heimann et al.   NATURE

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Rhizosphere bacteria from sites with higher fungal densities exhibit greater levels of potential antifungal properties

(2008) Wietse de Boer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial biomass, functional capacity, and community structure after 12 years of soil warming

(2008) S.D. Frey et al.   SOIL BIOLOGY & BIOCHEMISTRY

Labile, recalcitrant, and microbial carbon and nitrogen pools of a tallgrass prairie soil in the US Great Plains subjected to experimental warming and clipping

(2008) Asfaw Belay-Tedla et al.   SOIL BIOLOGY & BIOCHEMISTRY