Microbiomes: unifying animal and plant systems through the lens of community ecology theory
出版年份 2015 全文链接
标题
Microbiomes: unifying animal and plant systems through the lens of community ecology theory
作者
关键词
-
出版物
Frontiers in Microbiology
Volume 6, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2015-09-07
DOI
10.3389/fmicb.2015.00869
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- (2015) Andres Gomez et al. MOLECULAR ECOLOGY
- Shifts in Symbiotic Endophyte Communities of a Foundational Salt Marsh Grass following Oil Exposure from the Deepwater Horizon Oil Spill
- (2015) Demetra Kandalepas et al. PLoS One
- Mother's littlest helpers
- (2015) K. Hinde et al. SCIENCE
- Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes
- (2015) Kurt P. Kowalski et al. Frontiers in Microbiology
- Secretion systems and signal exchange between nitrogen-fixing rhizobia and legumes
- (2015) Matthew S. Nelson et al. Frontiers in Plant Science
- Establishment of Intestinal Microbiota during Early Life: a Longitudinal, Explorative Study of a Large Cohort of Danish Infants
- (2014) A. Bergstrom et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Spatial structuring of bacterial communities within individualGinkgo bilobatrees
- (2014) Jonathan W. Leff et al. ENVIRONMENTAL MICROBIOLOGY
- Associations between bacterial communities of house dust and infant gut
- (2014) T. Konya et al. ENVIRONMENTAL RESEARCH
- Order of arrival shifts endophyte-pathogen interactions in bean from resistance induction to disease facilitation
- (2014) Rosa-María Adame-Álvarez et al. FEMS MICROBIOLOGY LETTERS
- The unseen world: environmental microbial sequencing and identification methods for ecologists
- (2014) Naupaka Zimmerman et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
- Back to the future: natural history and the way forward in modern fungal ecology
- (2014) Kabir G. Peay Fungal Ecology
- Compositional and Functional Features of the Gastrointestinal Microbiome and Their Effects on Human Health
- (2014) Emily B. Hollister et al. GASTROENTEROLOGY
- Candida and Other Fungal Species
- (2014) B.P. Krom et al. JOURNAL OF DENTAL RESEARCH
- Fungal Endophytes of Aquatic Macrophytes: Diverse Host-Generalists Characterized by Tissue Preferences and Geographic Structure
- (2014) Dustin C. Sandberg et al. MICROBIAL ECOLOGY
- Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
- (2014) Charlie G. Buffie et al. NATURE
- Infection by a foliar endophyte elicits novel arabidopside-based plant defence reactions in its host,Cirsium arvense
- (2014) Susan E. Hartley et al. NEW PHYTOLOGIST
- Fungal endophyte increases the allelopathic effects of an invasive forb
- (2014) Erik T. Aschehoug et al. OECOLOGIA
- The microbiota and helminths: sharing the same niche in the human host
- (2014) LAURA GLENDINNING et al. PARASITOLOGY
- Ordering microbial diversity into ecologically and genetically cohesive units
- (2014) B. Jesse Shapiro et al. TRENDS IN MICROBIOLOGY
- Gut microbiome of the Hadza hunter-gatherers
- (2014) Stephanie L. Schnorr et al. Nature Communications
- Vertical transmission of fungal endophytes is widespread in forbs
- (2014) Susan Hodgson et al. Ecology and Evolution
- Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
- (2014) Nikos C. Kyrpides et al. PLOS BIOLOGY
- Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree
- (2014) Luis C. MejÃa et al. Frontiers in Microbiology
- Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
- (2014) Laura Wegener Parfrey et al. Frontiers in Microbiology
- Fecal Microbiota Transplantation for Clostridium difficile Infection: Systematic Review and Meta-Analysis
- (2013) Zain Kassam et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Structure and Functions of the Bacterial Microbiota of Plants
- (2013) Davide Bulgarelli et al. Annual Review of Plant Biology
- Dynamics of the continent-wide spread of aDrosophiladefensive symbiont
- (2013) Sarah N. Cockburn et al. ECOLOGY LETTERS
- Defensive symbiosis in the real world - advancing ecological studies of heritable, protective bacteria in aphids and beyond
- (2013) Kerry M. Oliver et al. FUNCTIONAL ECOLOGY
- Bioactive alkaloids in vertically transmitted fungal endophytes
- (2013) Daniel G. Panaccione et al. FUNCTIONAL ECOLOGY
- Comparative analysis of the biodiversity of fungal endophytes in insect-induced galls and surrounding foliar tissue
- (2013) Sarah P. Lawson et al. FUNGAL DIVERSITY
- Exploring the bovine rumen bacterial community from birth to adulthood
- (2013) Elie Jami et al. ISME Journal
- Species and organ specificity of fungal endophytes in herbaceous grassland plants
- (2013) James A. Wearn et al. JOURNAL OF ECOLOGY
- The skin microbiome: Current perspectives and future challenges
- (2013) Yiyin Erin Chen et al. JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY
- Assessment of the fungal diversity and succession of ligninolytic endophytes in Camellia japonica leaves using clone library analysis
- (2013) Dai Hirose et al. MYCOLOGIA
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- (2013) Felix Sommer et al. NATURE REVIEWS MICROBIOLOGY
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- (2013) Laurent Philippot et al. NATURE REVIEWS MICROBIOLOGY
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- (2013) Joshua C. Springer et al. PHYTOPATHOLOGY
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- (2013) Jonathan W. Leff et al. PLoS One
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- (2013) Juan A. Martín et al. PLoS One
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- (2013) Michele T. Hoffman et al. PLoS One
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Animals in a bacterial world, a new imperative for the life sciences
- (2013) Margaret McFall-Ngai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) M. I. Smith et al. SCIENCE
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- (2013) Rebecca M. Brotman et al. SEXUALLY TRANSMITTED DISEASES
- The human virome: new tools and concepts
- (2013) Marc Lecuit et al. TRENDS IN MICROBIOLOGY
- Development of intestinal microbiota in infants and its impact on health
- (2013) Sebastien Matamoros et al. TRENDS IN MICROBIOLOGY
- The emerging world of the fungal microbiome
- (2013) Gary B. Huffnagle et al. TRENDS IN MICROBIOLOGY
- Unexpected Diversity during Community Succession in the Apple Flower Microbiome
- (2013) A. Shade et al. mBio
- Microbiomic Signatures of Psoriasis: Feasibility and Methodology Comparison
- (2013) Alexander Statnikov et al. Scientific Reports
- Cohabiting family members share microbiota with one another and with their dogs
- (2013) Se Jin Song et al. eLife
- Host and geographic structure of endophytic and endolichenic fungi at a continental scale
- (2012) Jana M. U'Ren et al. AMERICAN JOURNAL OF BOTANY
- Fecal microbiota transplantation
- (2012) Olga C. Aroniadis et al. CURRENT OPINION IN GASTROENTEROLOGY
- A survey of endophytic fungi of switchgrass (Panicum virgatum) in the Midwest, and their putative roles in plant growth
- (2012) N.M. Kleczewski et al. Fungal Ecology
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- (2012) C. Lozupone et al. GENOME RESEARCH
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- A metagenomic insight into our gut's microbiome
- (2012) Patricia Lepage et al. GUT
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- (2012) Jana Voříšková et al. ISME Journal
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- (2012) Zongxin Ling et al. MICROBIAL ECOLOGY
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- (2012) Derek S. Lundberg et al. NATURE
- Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
- (2012) Davide Bulgarelli et al. NATURE
- A framework for human microbiome research
- (2012) NATURE
- Diversity, stability and resilience of the human gut microbiota
- (2012) Catherine A. Lozupone et al. NATURE
- Fecal transplant against relapsingClostridium difficile-associated diarrhea in 32 patients
- (2012) Christina Jorup-Rönström et al. SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY
- Compartmentalized Control of Skin Immunity by Resident Commensals
- (2012) S. Naik et al. SCIENCE
- The Application of Ecological Theory Toward an Understanding of the Human Microbiome
- (2012) E. K. Costello et al. SCIENCE
- Interactions Between the Microbiota and the Immune System
- (2012) L. V. Hooper et al. SCIENCE
- Microbiota-Targeted Therapies: An Ecological Perspective
- (2012) K. P. Lemon et al. Science Translational Medicine
- Linking metacommunity theory and symbiont evolutionary ecology
- (2012) Joseph R. Mihaljevic TRENDS IN ECOLOGY & EVOLUTION
- Phylogenetic Diversity Theory Sheds Light on the Structure of Microbial Communities
- (2012) James P. O'Dwyer et al. PLoS Computational Biology
- The function of our microbiota: who is out there and what do they do?
- (2012) Noora Ottman et al. Frontiers in Cellular and Infection Microbiology
- Hidden Fungi, Emergent Properties: Endophytes and Microbiomes
- (2011) Andrea Porras-Alfaro et al. Annual Review of Phytopathology
- Fungal endophytes directly increase the competitive effects of an invasive forb
- (2011) Erik T. Aschehoug et al. ECOLOGY
- Diversity of foliar endophytes in wind-fallen Picea abies trees
- (2011) Ondřej Koukol et al. FUNGAL DIVERSITY
- In vitro interactions between Fusarium verticillioides and Ustilago maydis through real-time PCR and metabolic profiling
- (2011) Alma E. Rodriguez Estrada et al. FUNGAL GENETICS AND BIOLOGY
- Applications of next-generation sequencing to phylogeography and phylogenetics
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Bifidobacteria can protect from enteropathogenic infection through production of acetate
- (2011) Shinji Fukuda et al. NATURE
- The skin microbiome
- (2011) Elizabeth A. Grice et al. NATURE REVIEWS MICROBIOLOGY
- Hail impact on leaves and endophytes of the endemic threatened Coccoloba cereifera (Polygonaceae)
- (2011) G. Wilson Fernandes et al. PLANT ECOLOGY
- Interactions between Fusarium verticillioides and Fusarium graminearum in maize ears and consequences for fungal development and mycotoxin accumulation
- (2011) A. Picot et al. PLANT PATHOLOGY
- Multispecies communities: interspecies interactions influence growth on saliva as sole nutritional source
- (2011) Paul E Kolenbrander International Journal of Oral Science
- Bacterial biogeography of the human digestive tract
- (2011) Jennifer C. Stearns et al. Scientific Reports
- Deep sequencing evidence from single grapevine plants reveals a virome dominated by mycoviruses
- (2010) M. Al Rwahnih et al. ARCHIVES OF VIROLOGY
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
- (2010) L. Dethlefsen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Succession of microbial consortia in the developing infant gut microbiome
- (2010) J. E. Koenig et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
- (2010) M. G. Dominguez-Bello et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Yeasts in floral nectar: a quantitative survey
- (2009) Carlos M. Herrera et al. ANNALS OF BOTANY
- EndophyticFusarium verticillioidesâreduces disease severity caused byUstilago maydison maize
- (2009) Keunsub Lee et al. FEMS MICROBIOLOGY LETTERS
- The beneficial endophyte Trichoderma hamatum isolate DIS 219b promotes growth and delays the onset of the drought response in Theobroma cacao
- (2009) H. Bae et al. JOURNAL OF EXPERIMENTAL BOTANY
- Fungal-Fungal Associations Affect the Assembly of Endophyte Communities in Maize (Zea mays)
- (2009) Jean J. Pan et al. MICROBIAL ECOLOGY
- Explaining microbial population genomics through phage predation
- (2009) Francisco Rodriguez-Valera et al. NATURE REVIEWS MICROBIOLOGY
- Microbiological control of soil-borne phytopathogenic fungi with special emphasis on wilt-inducingFusarium oxysporum
- (2009) Claude Alabouvette et al. NEW PHYTOLOGIST
- Fungal endophytes: diversity and functional roles
- (2009) R. J. Rodriguez et al. NEW PHYTOLOGIST
- Topographical and Temporal Diversity of the Human Skin Microbiome
- (2009) E. A. Grice et al. SCIENCE
- Bacterial Community Variation in Human Body Habitats Across Space and Time
- (2009) E. K. Costello et al. SCIENCE
- Fungal biomass associated with the phyllosphere of bryophytes and vascular plants
- (2009) M.L. Davey et al.
- Toward a better understanding of the regional causes of local community richness
- (2008) Susan Harrison et al. ECOLOGY LETTERS
- Endophyte-mediated resistance against white pine blister rust in Pinus monticola
- (2008) Rebecca J. Ganley et al. FOREST ECOLOGY AND MANAGEMENT
- Stress tolerance in plants via habitat-adapted symbiosis
- (2008) Rusty J Rodriguez et al. ISME Journal
- Worlds within worlds: evolution of the vertebrate gut microbiota
- (2008) Ruth E. Ley et al. NATURE REVIEWS MICROBIOLOGY
- The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms
- (2008) Jos M. Raaijmakers et al. PLANT AND SOIL
- Resistance, resilience, and redundancy in microbial communities
- (2008) S. D. Allison et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial endophytes: recent developments and applications
- (2007) Robert P. Ryan et al. FEMS MICROBIOLOGY LETTERS
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