Genome-wide DNA methylation analysis of Haloferax volcanii H26 and identification of DNA methyltransferase related PD-(D/E)XK nuclease family protein HVO_A0006

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Type II restriction endonucleases—a historical perspective and more

(2014) Alfred Pingoud et al.   NUCLEIC ACIDS RESEARCH

Methylome Diversification through Changes in DNA Methyltransferase Sequence Specificity

(2014) Yoshikazu Furuta et al.   PLoS Genetics

Extracellular DNA metabolism in Haloferax volcanii

(2014) Scott Chimileski et al.   Frontiers in Microbiology

Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence

(2013) James Murphy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diverse Functions of Restriction-Modification Systems in Addition to Cellular Defense

(2013) K. Vasu et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Type I restriction enzymes and their relatives

(2013) W. A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

The complex methylome of the human gastric pathogen Helicobacter pylori

(2013) Juliane Krebes et al.   NUCLEIC ACIDS RESEARCH

Type III restriction-modification enzymes: a historical perspective

(2013) Desirazu N. Rao et al.   NUCLEIC ACIDS RESEARCH

The other face of restriction: modification-dependent enzymes

(2013) Wil A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

Highlights of the DNA cutters: a short history of the restriction enzymes

(2013) Wil A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Methylome Characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at Single-Base Resolution

(2013) Maria Lluch-Senar et al.   PLoS Genetics

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

(2012) Gang Fang et al.   NATURE BIOTECHNOLOGY

The methylomes of six bacteria

(2012) Iain A. Murray et al.   NUCLEIC ACIDS RESEARCH

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI

(2011) Betty W. Shen et al.   NUCLEIC ACIDS RESEARCH

Improved Strains and Plasmid Vectors for Conditional Overexpression of His-Tagged Proteins in Haloferax volcanii

(2010) T. Allers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Defining the Plasmid-Borne Restriction-Modification Systems of the Lyme Disease Spirochete Borrelia burgdorferi

(2010) R. O. M. Rego et al.   JOURNAL OF BACTERIOLOGY

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Genome comparison and context analysis reveals putative mobile forms of restriction–modification systems and related rearrangements

(2010) Yoshikazu Furuta et al.   NUCLEIC ACIDS RESEARCH

Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments

(2010) M. Laganeckas et al.   NUCLEIC ACIDS RESEARCH

The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

(2010) Amber L. Hartman et al.   PLoS One

Towards a Systems Approach in the Genetic Analysis of Archaea: Accelerating Mutant Construction and Phenotypic Analysis inHaloferax volcanii

(2010) Ian K. Blaby et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Lateral Transfer of Genes and Gene Fragments in Prokaryotes

(2009) Cheong Xin Chan et al.   Genome Biology and Evolution

The MmeI family: type II restriction–modification enzymes that employ single-strand modification for host protection

(2009) Richard D. Morgan et al.   NUCLEIC ACIDS RESEARCH

Functional Analysis of MmeI from Methanol Utilizer Methylophilus methylotrophus, a Subtype IIC Restriction-Modification Enzyme Related to Type I Enzymes

(2008) J. Nakonieczna et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY