Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem

Comparison of Enrichment Conditions for Rapid Detection of Low Numbers of Sublethally Injured Escherichia coli O157in Food

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Trimmomatic: a flexible trimmer for Illumina sequence data

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Shiga toxin-converting phages and the emergence of new pathogenic Escherichia coli: a world in motion

(2014) Rosangela Tozzoli et al.   Frontiers in Cellular and Infection Microbiology

Escherichia coli O157:H7 Infections Associated With Consumption of Locally Grown Strawberries Contaminated by Deer

(2013) Matthew R. Laidler et al.   CLINICAL INFECTIOUS DISEASES

Prevalence and Antimicrobial Susceptibility of Foodborne Bacteria in Wild Boars (Sus scrofa) and Wild Deer (Cervus nippon) in Japan

(2013) Yoshimasa Sasaki et al.   Foodborne Pathogens and Disease

Increased Recognition of Non-O157 Shiga Toxin–Producing Escherichia coli Infections in the United States During 2000–2010: Epidemiologic Features and Comparison with E. coli O157 Infections

(2013) L. Hannah Gould et al.   Foodborne Pathogens and Disease

Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study

(2013) Karen L Kotloff et al.   LANCET

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Seropathotypes, Phylogroups, Stx Subtypes, and Intimin Types of Wildlife-Carried, Shiga Toxin-Producing Escherichia coli Strains with the Same Characteristics as Human-Pathogenic Isolates

(2012) Azucena Mora et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detection and characterization of Shiga toxin-producing Escherichia coli in faeces and lymphatic tissue of free-ranging deer

(2012) M. EGGERT et al.   EPIDEMIOLOGY AND INFECTION

A rapid procedure for the detection and isolation of enterohaemorrhagic Escherichia coli (EHEC) serogroup O26, O103, O111, O118, O121, O145 and O157 strains and the aggregative EHEC O104:H4 strain from ready-to-eat vegetables

(2011) Markus Tzschoppe et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Epidemic Profile of Shiga-Toxin–ProducingEscherichia coliO104:H4 Outbreak in Germany

(2011) Christina Frank et al.   NEW ENGLAND JOURNAL OF MEDICINE

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks

(2008) S. D. Manning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative efficacy of five different rep-PCR methods to discriminate Escherichia coli populations in aquatic environments

(2008) B. R. Mohapatra et al.   WATER SCIENCE AND TECHNOLOGY

Landscape genetics and the spatial distribution of chronic wasting disease

(2007) J. A Blanchong et al.   Biology Letters