Article
Multidisciplinary Sciences
D. R. Marinowic, G. Zanirati, F. V. F. Rodrigues, M. V. C. Grahl, A. M. Alcara, D. C. Machado, J. C. Da Costa
Summary: A low-cost, highly specific method for SARS-CoV-2 detection has been successfully developed using the SYBR Green RT-PCR method, with the ability to screen out negative cases and high safety and efficacy. Optimization of experimental parameters achieved high specificity of PCR products, providing technical support for large-scale screening.
SCIENTIFIC REPORTS
(2021)
Article
Virology
Gustaf Leijonhufvud, Amanj Bajalan, Tatiany Aparecida Teixeira Soratto, Britt Gustafsson, Gordana Bogdanovic, Annelie Bjerkner, Tobias Allander, Gustaf Ljungman, Bjorn Andersson
Summary: TTV is a group of chronically persisting viruses with a wide sequence diversity, and studies suggest that it is more common than detected by conventional qPCR assays. Analysis of TTV genome sequences reveals that some strains may not be detected by qPCR designed on a conserved region of the TTV genome.
JOURNAL OF MEDICAL VIROLOGY
(2022)
Article
Biochemical Research Methods
Yin-he Xia, Zi-cong Shi, Xin-wei Wang, Yong-tao Li, Zeng Wang, Hong-tao Chang, Hong-ying Liu, Lu Chen, Chuan-qing Wang, Xia Yang
Summary: GETV, a mosquito-borne virus, is increasingly posing a threat to animal safety and public health. The newly developed RT-qPCR assay for GETV has high sensitivity and reproducibility, making it suitable for rapid diagnosis and quantitative analysis of GETV infection.
MOLECULAR AND CELLULAR PROBES
(2021)
Article
Veterinary Sciences
Dan Yin, Renhao Geng, Hui Lv, Chunhui Bao, Hongxia Shao, Jianqiang Ye, Kun Qian, Aijian Qin
Summary: The real-time PCR assay targeting the A137R gene showed better performance in detecting ASFV from clinical samples compared to the OIE-recommended TaqMan PCR, indicating its potential application in ASF control and eradication programs.
FRONTIERS IN VETERINARY SCIENCE
(2021)
Article
Medicine, General & Internal
Ayesha Nayyar, Suhaib Ahmed
Summary: The study aimed to optimize and evaluate real time PCR of Single Nucleotide Polymorphism by SYBR Green for detecting donor chimerism after haematopoietic stem cell transplantation. The results showed that this method was sensitive and effective in detecting chimerism in post-transplant patients with various haematological disorders.
PAKISTAN JOURNAL OF MEDICAL SCIENCES
(2021)
Article
Microbiology
Eiseul Kim, Dayoung Kim, Seung-Min Yang, Hae-Yeong Kim
Summary: In this study, a multiplex real-time PCR method was developed to identify and differentiate three closely related species in the Lactobacillus acidophilus group. The method showed high specificity and sensitivity, with a detection limit of 10(1) CFU/ml. It can be used for monitoring these species in probiotic and dairy products.
MICROBIOLOGICAL RESEARCH
(2022)
Article
Biochemical Research Methods
Yong Wang, Ziteng Fu, Xu Guo, Da Zhang, Caixia Bai, Wei Li, Guangqing Liu, Yongdong Li, Shudong Jiang
Summary: A SYBR Green I-based real-time RT-PCR method was developed for clinical diagnosis of feline astroviruses, showing good specificity, sensitivity, and reproducibility. The method has a higher positive detection rate compared to conventional RT-PCR and is cheap and effective for large-scale clinical testing and epidemiological investigation.
JOURNAL OF VIROLOGICAL METHODS
(2021)
Article
Medical Laboratory Technology
Maysaa El S. Zaki, Amr M. El-Sabbagh, Mostafa A. El Salam, Mohamed Mefreh
Summary: The study demonstrated a high prevalence of TTV in stool samples from adults with acute gastroenteritis, with TTV being detected in 83% of patients. Norovirus and rotavirus were also commonly found in these patients, with detection rates of 20% each. The presence of TTV did not have any detected effects on the clinical features of gastroenteritis in these patients.
CLINICAL LABORATORY
(2021)
Article
Medicine, Legal
Zhonghao Yu, Quyi Xu, Cheng Xiao, Huan Li, Weibin Wu, Weian Du, Jian Zhao, Hong Liu, Huijun Wang, Chao Liu
Summary: In drowning research, the method of diatom morphology is commonly used to determine the cause of death. However, a new method involving gene detection of phytoplankton has been proposed in this study, showing higher accuracy and faster diagnosis of drowning cases.
FORENSIC SCIENCE INTERNATIONAL
(2021)
Article
Endocrinology & Metabolism
Carsten T. Herz, Oana C. Kulterer, Dorian Kulifaj, Fanny Gelas, Bernhard Franzke, Frederik Haupenthal, Gerhard Prager, Felix B. Langer, Rodrig Marculescu, Alexander R. Haug, Florian W. Kiefer, Gregor Bond
Summary: Obese individuals have higher TTV load, potentially indicating compromised immune function and serving as a risk stratification factor for unfavorable outcomes in infectious diseases including COVID-19 among this population. Further analysis of TTV-based risk assessment in obese individuals in the context of infectious disease outcomes is warranted based on our data.
FRONTIERS IN ENDOCRINOLOGY
(2022)
Article
Biochemical Research Methods
Liting Sun, Zhiqing Xu, Junhuang Wu, Yongqiu Cui, Xu Guo, Fazhi Xu, Yongdong Li, Yong Wang
Summary: A novel duplex SYBR Green I-based qPCR assay was developed for the rapid and simultaneous detection of FPV and FCoV, demonstrating sensitivity and specificity in detecting these viruses.
JOURNAL OF VIROLOGICAL METHODS
(2021)
Article
Virology
Antonin Bal, Gregory Destras, Marina Sabatier, Maxime Pichon, Hadrien Regue, Guy Oriol, Yves Gillet, Bruno Lina, Karen Brengel-Pesce, Laurence Josset, Florence Morfin
Summary: This study analyzed respiratory samples from children with acute respiratory infections of unknown etiology and found a high prevalence of Torque teno mini virus (TTMV) in these samples, as well as in samples with respiratory syncytial virus (RSV) or influenza infection. Larger studies are needed to explore the role of TTMV in childhood respiratory diseases.
Article
Genetics & Heredity
Jitendra K. Biswal, Biswa Ranjan Jena, Syed Zeeshan Ali, Rajeev Ranjan, Jajati K. Mohapatra, Rabindra Prasad Singh
Summary: A rapid, sensitive and reliable laboratory detection method for foot-and-mouth disease virus infection was developed in India. The new method showed higher sensitivity, reproducibility and specificity compared to traditional methods. It had a higher success rate in detecting positive samples compared to the traditional method.
Article
Microbiology
Flora Marzia Liotti, Simona Marchetti, Federico Falletta, Sara D'Onghia, Maurizio Sanguinetti, Rosaria Santangelo, Brunella Posteraro
Summary: We report on the excellent performance of the QIAstat-Dx assay for the detection of human monkeypox virus (MPXV) in clinical samples.
Article
Virology
Florian Laubscher, Mary-Anne Hartley, Laurent Kaiser, Samuel Cordey
Summary: This study investigates the genomic diversity of Torque teno virus (TTV) in blood samples from febrile Tanzanian children. The results show that TTV is highly prevalent in the blood samples, with a wide variety of genotypes and species. Furthermore, the diversity of co-detected TTV was significantly associated with the age of the subjects, indicating repetitive acquisition of TTV during the first months/years of life.
Article
Anesthesiology
Shathish Kumar, Ramasamy Kesavan, Sarath Chandra Sistla, Prasanth Penumadu, Harivenkatesh Natarajan, Sreekumaran Nair, Uppugunduri Chakradhara S. Rao, Vasuki Venkatesan, Pankaj Kundra
Summary: This study evaluated the association between 10 candidate SNPs in 9 genes and postoperative fentanyl dose, pain scores, and time for first analgesia. The results showed that certain SNPs were associated with higher fentanyl requirement and higher pain scores, while other SNPs were associated with lower pain scores and shorter time for first analgesia.
ANESTHESIA AND ANALGESIA
(2023)
Article
Pediatrics
Viviane Richard, Roxane Dumont, Elsa Lorthe, Andrea Loizeau, Helene Baysson, Maria-Eugenia Zaballa, Francesco Pennacchio, Remy P. Barbe, Klara Posfay-Barbe, Idris Guessous, Silvia Stringhini
Summary: This study investigated the medium-term impact of the COVID-19 pandemic on the wellbeing and mental health of children and adolescents. The results showed that 12.7% of participants experienced a severe impact, which was associated with worsened health-related quality of life and mental health. This study indicates that the pandemic may have persistent consequences on children and adolescents, especially those with health and family vulnerabilities.
CHILD AND ADOLESCENT PSYCHIATRY AND MENTAL HEALTH
(2023)
Article
Oncology
Angela D. Trobaugh-Lotrario, Rudolf Maibach, Daniel C. Aronson, Arun Rangaswami, Beate Haeberle, Allison F. O'Neill, Irene Schmid, Marc Ansari, Tomoro Hishiki, Sarangarajan Ranganathan, Rita Alaggio, Ronald R. de Krijger, Yukichi Tanaka, Soo-Jin Cho, Christian Vokuhl, Rebecca Maxwell, Mark Krailo, Eiso Hiyama, Piotr Czauderna, Milton Finegold, James H. Feusner, Marcio H. Malogolowkin, Rebecka L. Meyers, Dolores Lopez-Terrada
Summary: Hepatoblastoma is the most common malignant liver tumor in children, and small cell undifferentiated histology and low alpha-fetoprotein levels have been associated with poor prognosis. It is important to differentiate rhabdoid tumors from hepatoblastoma with small cell undifferentiated component or low alpha-fetoprotein levels, as the treatment differs significantly. When rhabdoid tumors are correctly diagnosed, neither the presence of small cell undifferentiated component nor low alpha-fetoprotein levels are associated with poor prognosis.
Article
Pediatrics
Vladimir L. L. Cousin, Robert Rodriguez-Vigouroux, Oliver Karam, Peter Rimensberger, Klara M. M. Posfay-Barbe
Summary: This retrospective study investigated the occurrence of infections in patients receiving Veno-arterial Extracorporeal Membrane Oxygenation (VA-ECMO) support in the Pediatric Intensive Care Unit (PICU). The study found that 34% of patients developed infections during VA-ECMO support, with infections occurring early and potentially prolonging the duration of VA-ECMO support and PICU length of stay.
Article
Biophysics
Claire Seydoux, Chakradhara Rao Satyanarayana Uppugunduri, Michael Medinger, Tiago Nava, Joerg Halter, Dominik Heim, Yves Chalandon, Urs Schanz, Gayathri Nair, Nathan Cantoni, Jakob R. Passweg, Marc Ansari
Summary: This study investigated the correlation between GSTA1 gene polymorphisms and Bu pharmacokinetics in 60 adult patients receiving allo-HCT with BuCyBu or CyBu conditioning regimens. The results showed that patients with GSTA1*B*B polymorphisms had significantly higher Bu-AUC compared to those with GSTA1*A*A polymorphisms, and there was a significant correlation with Bu clearance. Patients with lower AUC values may have lower non-relapse mortality (NRM).
BONE MARROW TRANSPLANTATION
(2023)
Article
Health Care Sciences & Services
Mayssam Nehme, Franck Schneider, Anne Perrin, Wing Sum Yu, Simon Schmitt, Guillemette Violot, Aurelie Ducrot, Frederique Tissandier, Klara Posfay-Barbe, Idris Guessous
Summary: The RAFAEL platform is an ecosystem created to provide information about and management of post-COVID-19. It integrates online information, webinars, and chatbot technology to answer a large number of individuals in a time- and resource-limited setting. The platform has been successfully developed and deployed in Geneva, with high user engagement and positive feedback rates, playing a significant role in post-COVID-19 management.
JOURNAL OF MEDICAL INTERNET RESEARCH
(2023)
Article
Pharmacology & Pharmacy
Reka Devanathan, Charanraj Goud Alladi, Mirunalini Ravichandran, Kesavan Ramasamy, Chakradhara Rao S. Uppugunduri
Summary: The Indo-Swiss symposium on pharmacogenomic strategies for the implementation of personalized medicine took place on November 19, 2022, as part of the Jawaharlal Institute of Postgraduate Medical Education and Research Integrated Pharmacogenomics Program in Puducherry, India. The symposium was conducted in a hybrid mode and focused on the impact of pharmacogenomics on achieving personalized medicine/precision medicine in the clinical setting. It aimed to promote interaction among participants for future collaborative research projects and provided a platform for young researchers to present their findings as posters to the audience.
Article
Multidisciplinary Sciences
Nicolas Waespe, Simona Jurkovic Mlakar, Isabelle Dupanloup, Mohamed Aziz Rezgui, Henrique Bittencourt, Maja Krajinovic, Claudia E. Kuehni, Tiago Nava, Marc Ansari
Summary: This study developed a new data analysis pipeline that combines in vitro information with clinical WES data to identify genetic determinants in rare diseases. The analysis revealed 35 genes associated with sinusoidal obstruction syndrome (SOS), which are involved in various biological functions and processes such as cell growth and death, signalling molecules and interaction, cancer, and infectious disease.
Editorial Material
Surgery
Klara M. Posfay-Barbe, Lara Danziger-Isakov
AMERICAN JOURNAL OF TRANSPLANTATION
(2023)
Article
Pediatrics
Rahel Kasteler, Maria Otth, Florian S. Halbeisen, Luzius Mader, Florian Singer, Jochen Roessler, Nicolas X. von der Weid, Marc Ansari, Claudia E. Kuehni
Summary: Childhood cancer survivors exposed to lung-toxic treatments are at risk for pulmonary morbidity. This study investigated the lung function trajectories in these survivors over time and the association with lung-toxic treatments. The results showed that reduced pulmonary function was frequent but mainly of mild to moderate severity, and survivors treated with thoracic surgery had lower lung function compared to those without surgery.
PEDIATRIC PULMONOLOGY
(2023)
Article
Pediatrics
Srinath Chinnakotla, Carlos Esquivel, Katherine Twombley, Klara Posfay-Barbe, Sheri M. Krams
Summary: The 12th Congress of IPTA was held in Austin, Texas, attracting over 400 attendees from 40 countries. The event covered various aspects of pediatric transplantation, including clinical care management, basic science research, socioeconomic factors, and ethical and organ donation issues.
PEDIATRIC TRANSPLANTATION
(2023)
Article
Oncology
Fabien N. Belle, Christina Schindera, Marc Ansari, Gregory T. Armstrong, Maja Beck-Popovic, Rebecca Howell, Wendy M. Leisenring, Lillian R. Meacham, Jochen Rossler, Ben D. Spycher, Emily Tonorezos, Nicolas X. von der Weid, Yutaka Yasui, Kevin C. Oeffinger, Claudia E. Kuehni
Summary: The study compared the prevalence of overweight and obesity among childhood acute lymphoblastic leukemia survivors in North America and Switzerland, finding that survivors in North America had significantly higher rates of overweight and obesity compared to Swiss survivors and siblings. Risk factors for obesity among survivors included living in North America, being male, older age, non-Hispanic Black ethnicity, and younger age at diagnosis.
Article
Pharmacology & Pharmacy
Ashwin Kamath, Preethi Shenoy, Sheetal Ullal, Ashok Shenoy, Sahana Acharya, Rajeshwari Shastry, Rashmi Rao, Priyanka Kamath, Poovizhi Bharathi, Chakradhara Rao Uppugunduri
Summary: The International Conference on Clinical Pharmacology and Pharmacogenomics 2023 aimed to integrate clinical pharmacology with pharmacogenomics and provide a platform for professionals in related fields to gather and exchange ideas. This report describes the proceedings of the conference for those who could not attend but are interested in the scientific program.
Article
Oncology
Jakob R. Passweg, Helen Baldomero, Marc Ansari, Caroline Arber, Yves Chalandon, Michael Daskalakis, Miriam Diepold, Tamara Diesch-Furlanetto, Michel A. Duchosal, Sabine Gerull, Tayfun Gungor, Dominik Heim, Felicitas Hitz, Andreas Holbro, Stavroula Masouridi-Levrat, Gayathri Nair, Urban Novak, Thomas Pabst, Christoph Renner, Georg Stussi, Dominik Schneidawind, Urs Schanz, Luciano Wannesson, Jorg P. Halter
Summary: The Swiss Blood Stem Cell Transplantation and Cellular Therapy Group has conducted a study on hematopoietic stem cell transplants (HCT) and cellular therapies in Switzerland. The study shows that there have been changes over time, such as an increase in the age of transplant recipients and improvements in overall survival and progression-free survival. The study also notes the emergence of chimeric antigen receptor T-cell (CAR-T) treatment in recent years.
HEMATOLOGICAL ONCOLOGY
(2023)
Meeting Abstract
Pharmacology & Pharmacy
Yahia Bennani, Khalil Ben Hassine, Muhammed Gencaslan, Mary Boudal-Khoshbeen, Melanie Kuntzinger, Tiago Nava, Caroline Samer, Marc Ansari, Youssef Daali, Chakradhara Rao Satyanarayana Uppugunduri
BRITISH JOURNAL OF PHARMACOLOGY
(2023)