4.4 Article

Clinical resistance to vicriviroc through adaptive V3 loop mutations in HIV-1 subtype D gp120 that alter interactions with the N-terminus and ECL2 of CCR5

期刊

VIROLOGY
卷 400, 期 1, 页码 145-155

出版社

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.virol.2010.01.037

关键词

HIV-1; Virus entry; CCR5 co-receptor; GPCR; CCR5 antagonists; Vicriviroc; gp120 resistance mutations

类别

向作者/读者索取更多资源

The HIV-1 CCR5 co-receptor is a member of the chemokine receptor family of G-protein coupled receptors; for which a number of small molecule antagonists, such as vicriviroc (VCV), have been developed to inhibit HIV-1 R5-tropic replication. In this study, we analyzed an HIV-1 subtype D envelope gene from a clinical trial subject who developed complete resistance to VCV. The HIV-1 resistant envelope has six predominant amino acid changes in the V3 loop, together with one change in the C4 domain of gp120, which are fully responsible for the resistance phenotype. V3 loop mutations Q315E and R321G are essential for resistance to VCV, whereas E328K and G429R in C4 contribute significantly to the infectivity of the resistant variant. Collectively, these amino acid changes influenced the interaction of gp120 with both the N-terminus and ECL2 region of CCR5. (C) 2010 Elsevier Inc. All rights reserved.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.4
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Chemistry, Medicinal

Implications of Dynamic Occupancy, Binding Kinetics, and Channel Gating Kinetics for hERG Blocker Safety Assessment and Mitigation

Robert A. Pearlstein, K. Andrew MacCannell, Gul Erdemli, Sarita Yeola, Gabriel Helmlinger, Qi-Ying Hu, Ramy Farid, William Egan, Steven Whitebread, Clayton Springer, Jeremy Beck, Hao-Ran Wang, Mateusz Maciejewski, Laszlo Urban, Jose S. Duca

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2016)

Article Biochemistry & Molecular Biology

Collaborating to improve the use of free-energy and other quantitative methods in drug discovery

Bradley Sherborne, Veerabahu Shanmugasundaram, Alan C. Cheng, Clara D. Christ, Renee L. DesJarlais, Jose S. Duca, Richard A. Lewis, Deborah A. Loughney, Eric S. Manas, Georgia B. McGaughey, Catherine E. Peishoff, Herman van Vlijmen

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2016)

Article Chemistry, Multidisciplinary

Structure-Kinetic Relationships of Passive Membrane Permeation from Multiscale Modeling

Callum J. Dickson, Viktor Hornak, Robert A. Pearlstein, Jose S. Duca

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

Article Chemistry, Medicinal

Addition and Subtraction: Selectivity Design for Type II Maternal Embryonic Leucine Zipper Kinase Inhibitors

Xin Chen, John Giraldes, Elizabeth R. Sprague, Subarna Shakya, Zhuoliang Chen, Yaping Wang, Carol Joud, Simon Mathieu, Christine Hiu-Tung Chen, Christopher Straub, Jose Duca, Kristen Hurov, Yanqiu Yuan, Wenlin Shao, B. Barry Toure

JOURNAL OF MEDICINAL CHEMISTRY (2017)

Article Chemistry, Medicinal

Using Membrane Partitioning Simulations To Predict Permeability of Forty-Nine Drug-Like Molecules

Callum J. Dickson, Viktor Hornak, Dallas Bednarczyk, Jose S. Duca

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)

Article Chemistry, Medicinal

PathwayMap: Molecular Pathway Association with Self-Normalizing Neural Networks

Jose Jimenez, Davide Sabbadin, Alberto Cuzzolin, Gerard Martinez-Rosell, Jacob Gora, John Manchester, Jose Duca, Gianni De Fabritiis

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)

Article Biochemistry & Molecular Biology

A small-molecule inhibitor of C5 complement protein

Keith Jendza, Mitsunori Kato, Michael Salcius, Honnappa Srinivas, Andrea De Erkenez, Anh Nguyen, Doug McLaughlin, Celine Be, Christian Wiesmann, Jason Murphy, Philippe Bolduc, Muneto Mogi, Jose Duca, Abdel Namil, Michael Capparelli, Veronique Darsigny, Erik Meredith, Ritesh Tichkule, Luciana Ferrara, Jessica Heyder, Fang Liu, Patricia A. Horton, Michael J. Romanowski, Markus Schirle, Nello Mainolfi, Karen Anderson, Gregory A. Michaud

NATURE CHEMICAL BIOLOGY (2019)

Article Multidisciplinary Sciences

Hidden bias in the DUD-E dataset leads to misleading performance of deep learning in structure-based virtual screening

Lieyang Chen, Anthony Cruz, Steven Ramsey, Callum J. Dickson, Jose S. Duca, Viktor Hornak, David R. Koes, Tom Kurtzman

PLOS ONE (2019)

Article Biochemistry & Molecular Biology

Hepatitis C virus infection increases autophagosome stability by suppressing lysosomal fusion through an Arl8b-dependent mechanism

Kellyann N. Jones-Jamtgaard, Ann L. Wozniak, Hiroshi Koga, Robert Ralston, Steven A. Weinman

JOURNAL OF BIOLOGICAL CHEMISTRY (2019)

Article Virology

Visualization of Positive and Negative Sense Viral RNA for Probing the Mechanism of Direct-Acting Antivirals against Hepatitis C Virus

Dandan Liu, Philip R. Tedbury, Shuiyun Lan, Andrew D. Huber, Maritza N. Puray-Chavez, Juan Ji, Eleftherios Michailidis, Mohsan Saeed, Tanyaradzwa P. Ndongwe, Leda C. Bassit, Raymond F. Schinazi, Robert Ralston, Charles M. Rice, Stefan G. Sarafianos

VIRUSES-BASEL (2019)

Article Chemistry, Medicinal

Revealing Molecular Determinants of hERG Blocker and Activator Binding

Callum J. Dickson, Camilo Velez-Vega, Jose S. Duca

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2020)

Review Biotechnology & Applied Microbiology

Rethinking drug design in the artificial intelligence era

Petra Schneider, W. Patrick Walters, Alleyn T. Plowright, Norman Sieroka, Jennifer Listgarten, Robert A. Goodnow, Jasmin Fisher, Johanna M. Jansen, Jose S. Duca, Thomas S. Rush, Matthias Zentgraf, John Edward Hill, Elizabeth Krutoholow, Matthias Kohler, Jeff Blaney, Kimito Funatsu, Chris Luebkemann, Gisbert Schneider

NATURE REVIEWS DRUG DISCOVERY (2020)

Article Chemistry, Physical

Evaluating the Efficiency of the Martini Force Field to Study Protein Dimerization in Aqueous and Membrane Environments

Christos Lamprakis, Ioannis Andreadelis, John Manchester, Camilo Velez-Vega, Jose S. Duca, Zoe Cournia

Summary: The study suggests that Martini 2.2P overestimates the free energy of association for proteins, while Martini 3 performs better in describing the association of membrane proteins. Near-native dimer complexes are identified as minima in the free energy surface, although not always as the lowest minima.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2021)

Article Chemistry, Multidisciplinary

Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease

Anna Pavlova, Diane L. Lynch, Isabella Daidone, Laura Zanetti-Polzi, Micholas Dean Smith, Chris Chipot, Daniel W. Kneller, Andrey Kovalevsky, Leighton Coates, Andrei A. Golosov, Callum J. Dickson, Camilo Velez-Vega, Jose S. Duca, Josh V. Vermaas, Yui Tik Pang, Atanu Acharya, Jerry M. Parks, Jeremy C. Smith, James C. Gumbart

Summary: The main protease of SARS-CoV-2 is a promising target for antiviral therapeutics, crucial in the viral life cycle. The stability of its structure is highly sensitive to the protonation states of key residues, impacting drug design efforts.

CHEMICAL SCIENCE (2021)

Review Chemistry, Medicinal

Building New Bridges between In Vitro and In Vivo in Early Drug Discovery: Where Molecular Modeling Meets Systems Biology

Robert A. Pearlstein, Daniel J. J. McKay, Viktor Hornak, Callum Dickson, Andrei Golosov, Tyler Harrison, Camilo Velez-Vega, Jose Duca

CURRENT TOPICS IN MEDICINAL CHEMISTRY (2017)

Article Virology

Hemagglutinin affects replication, stability and airborne transmission of the H9N2 subtype avian influenza virus

Naiqing Xu, Xinen Tang, Xin Wang, Miao Cai, Xiaowen Liu, Xiaolong Lu, Shunlin Hu, Min Gu, Jiao Hu, Ruyi Gao, Kaituo Liu, Yu Chen, Xiufan Liu, Xiaoquan Wang

Summary: This study found that the H9N2 subtype avian influenza virus has a high airborne transmissibility, while the H7N9 virus does not. The Hemagglutinin protein of the H9N2 virus was found to play a key role in replication, stability, and airborne transmission.

VIROLOGY (2024)

Article Virology

Contagious ecthyma in Egypt: Clinical, virological and molecular explorations

Samar S. Ewies, Sabry M. Tamam, Ahmed S. Abdel-Moneim, Sherin R. Rouby

Summary: Contagious ecthyma (CE) is a highly contagious viral disease of sheep and goats worldwide. The study provided a clinical description of CE and screened for genetic variation in the B2L gene. Infected sheep exhibited anorexia and oral lesions, while inoculated chicken embryos showed pock lesions. The B2L gene was successfully amplified and found to be highly conserved.

VIROLOGY (2024)

Article Virology

Genetic characterization of newly emerging avian reovirus variants in chickens with viral arthritis/tenosynovitis in Israel

Yigal Farnoushi, Dan Heller, Avishai Lublin

Summary: In recent years, new variants of avian reovirus (ARV) have caused a variety of symptoms in chickens worldwide, including viral arthritis/tenosynovitis. This study analyzed emerging ARV variants in Israel and found significant genetic diversity. Most ARV isolates in Israel belonged to genotypic cluster 5 (GC5). The study suggests that Israel has not experienced the emergence of new ARV variants since the introduction of the live vaccine (ISR-7585), but ongoing monitoring is needed due to the continuous emergence of ARV variants.

VIROLOGY (2024)

Article Virology

Mutations in the 3′ non-coding region of a no-known vector flavivirus Yokose virus increased its replication ability in mosquito C6/36 cells

Shigeru Tajima, Michiyo Kataoka, Yuki Takamatsu, Hideki Ebihara, Chang-Kweng Lim

Summary: Yokose virus (YOKV), a bat-associated flavivirus, was found to replicate at a slower rate in mosquito cells compared to other mosquito-borne flaviviruses. Specific nucleotide mutations in the virus were identified to enhance its proliferation ability in mosquito cells.

VIROLOGY (2024)

Article Virology

Innate immune responses reverse HIV cognitive disease in mice: Profile by RNAseq in the brain

Alejandra Borjabad, Baojun Dong, Wei Chao, David J. Volsky, Mary Jane Potash

Summary: This study investigated HIV brain disease using a mouse model, and found that poly I:C can reverse associated cognitive impairment and reduce virus burden. The results also revealed transcriptional changes related to neuronal function and innate immune responses.

VIROLOGY (2024)

Article Virology

Identification of subgenomic mRNAs derived from the coronavirus 1a/1b protein gene: Implications for coronavirus transcription

Ching-Hung Lin, Feng-Cheng Hsieh, Meilin Wang, Chieh Hsu, Hsuan-Wei Hsu, Chun-Chun Yang, Cheng-Yao Yang, Hung-Yi Wu

Summary: This study demonstrates that the synthesis of coronavirus subgenomic mRNA is not solely determined by the sequence homology between the leader TRS and TRS-B, but also by the disassociation of the coronavirus polymerase from the viral genome. This finding provides a new insight into the transcription mechanism of coronaviruses.

VIROLOGY (2024)

Article Virology

Expression dynamics of the aplysia abyssovirus

Nicholas S. Kron, Benjamin W. Neuman, Sathish Kumar, Patricia L. Blackwelder, Dayana Vidal, Delphina Z. Walker-Phelan, Patrick D. I. Gibbs, Lynne A. Fieber, Michael C. Schmale

Summary: Two recent studies documented the genome of a novel virus in marine animals, finding that the virus is widespread in apparently healthy animals but not highly expressed in neurons. The studies also identified viral replication factories and high levels of defective genomes in chronically infected animals.

VIROLOGY (2024)

Article Virology

Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska

Andrew M. Ramey, Laura C. Scott, Christina A. Ahlstrom, Evan J. Buck, Alison R. Williams, Mia Kim Torchetti, David E. Stallknecht, Rebecca L. Poulson

Summary: We successfully detected and characterized highly pathogenic avian influenza viruses in hunter-harvested wild waterfowl samples from western Alaska. Genomic analysis revealed three independent viral introductions into Alaska. Our findings demonstrate the utility and potential limitations of using molecular processing approaches directly on original swab samples for viral research and monitoring.

VIROLOGY (2024)

Article Virology

Inhibitory effects of quercetin on porcine epidemic diarrhea virus in vitro and in vivo

Ting Gong, Dongdong Wu, Yongzhi Feng, Xing Liu, Qi Gao, Xiaoyu Zheng, Zebu Song, Heng Wang, Guihong Zhang, Lang Gong

Summary: This study discovered that quercetin can inhibit PEDV replication both in vivo and in vitro, and alleviate the clinical symptoms and intestinal injury caused by the virus. This provides a new direction for the development of PED antiviral drugs.

VIROLOGY (2024)

Article Virology

Reassortant H9N2 canine influenza viruses containing the pandemic H1N1/ 2009 ribonucleoprotein complex circulating in pigs acquired enhanced virulence in mice

Min Zhu, Hao Zeng, Jianqiao He, Yaohui Zhu, Pingping Wang, Jianing Guo, Jinfan Guo, Huabo Zhou, Yifeng Qin, Kang Ouyang, Zuzhang Wei, Weijian Huang, Ying Chen

Summary: The reassortment between avian H9N2 and Eurasian avian-like (EA) H1N1 viruses may have potentially changed from avian-to-mammals adaptation. This study found that the introduction of EA H1N1 internal genes into H9N2 virus restored the replication capability and resulted in extreme virulence in some cases. This raises new concerns for public health due to the possible coexistence of H9N2 and EA H1N1 viruses in dogs.

VIROLOGY (2024)