标题
Contacts-based prediction of binding affinity in protein–protein complexes
作者
关键词
-
出版物
eLife
Volume 4, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2015-07-20
DOI
10.7554/elife.07454
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts
- (2014) E. Chermak et al. BIOINFORMATICS
- CCharPPI web server: computational characterization of protein-protein interactions from structure
- (2014) I. H. Moal et al. BIOINFORMATICS
- Latest approaches for efficient protein production in drug discovery
- (2014) Toshihiko Sugiki et al. Expert Opinion on Drug Discovery
- A functional feature analysis on diverse protein–protein interactions: application for the prediction of binding affinity
- (2014) Jiesi Luo et al. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
- Proteins Feel More Than They See: Fine-Tuning of Binding Affinity by Properties of the Non-Interacting Surface
- (2014) Panagiotis L. Kastritis et al. JOURNAL OF MOLECULAR BIOLOGY
- Improving ranking of models for protein complexes with side chain modeling and atomic potentials
- (2013) Shruthi Viswanath et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Ranking multiple docking solutions based on the conservation of inter-residue contacts
- (2013) Romina Oliva et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Clustering biomolecular complexes by residue contacts similarity
- (2012) João P. G. L. M. Rodrigues et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding
- (2012) Iain H. Moal et al. PLoS Computational Biology
- Structure-based prediction of protein–protein binding affinity with consideration of allosteric effect
- (2011) Feifei Tian et al. AMINO ACIDS
- COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes
- (2011) A. Vangone et al. BIOINFORMATICS
- Protein–protein binding affinity prediction on a diverse set of structures
- (2011) Iain H. Moal et al. BIOINFORMATICS
- Interactome Networks and Human Disease
- (2011) Marc Vidal et al. CELL
- Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein−Protein Docking
- (2011) Carles Pons et al. Journal of Chemical Information and Modeling
- Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology
- (2011) Sarel J. Fleishman et al. JOURNAL OF MOLECULAR BIOLOGY
- A structure-based benchmark for protein-protein binding affinity
- (2011) Panagiotis L. Kastritis et al. PROTEIN SCIENCE
- Automated Prediction of Protein Association Rate Constants
- (2011) Sanbo Qin et al. STRUCTURE
- PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta
- (2010) S. Chaudhury et al. BIOINFORMATICS
- Optimizing energy functions for protein-protein interface design
- (2010) Oz Sharabi et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Computational Mapping of Anchoring Spots on Protein Surfaces
- (2010) Avraham Ben-Shimon et al. JOURNAL OF MOLECULAR BIOLOGY
- Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
- (2010) Panagiotis L. Kastritis et al. JOURNAL OF PROTEOME RESEARCH
- Calculation of the free energy of association for protein complexes
- (2010) Nancy Horton et al. PROTEIN SCIENCE
- Performance of ZDOCK and ZRANK in CAPRI rounds 13-19
- (2010) Howook Hwang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Predicting kinetic constants of protein-protein interactions based on structural properties
- (2010) Hongjun Bai et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Transient Protein-Protein Interactions: Structural, Functional, and Network Properties
- (2010) James R. Perkins et al. STRUCTURE
- Fast predictions of thermodynamics and kinetics of protein–protein recognition from structures: from molecular design to systems biology
- (2009) Daniele Dell’Orco Molecular BioSystems
- Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction
- (2009) Yu Su et al. PROTEIN SCIENCE
- PIEâEfficient filters and coarse grained potentials for unbound proteinâprotein docking
- (2009) D. V. S. Ravikant et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Analyzing Protein Interaction Networks Using Structural Information
- (2008) Christina Kiel et al. Annual Review of Biochemistry
- Identification of Protein Interaction Partners and Protein–Protein Interaction Sites
- (2008) Sophie Sacquin-Mora et al. JOURNAL OF MOLECULAR BIOLOGY
- A combination of rescoring and refinement significantly improves protein docking performance
- (2008) Brian Pierce et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
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