Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita

Evolution of early development in dipterans: Reverse-engineering the gap gene network in the moth midge Clogmia albipunctata (Psychodidae)

(2014) Anton Crombach et al.   BIOSYSTEMS

Pipeline for acquisition of quantitative data on segmentation gene expression from confocal images

(2014) Svetlana Surkova et al.   FLY

Bioattractors: dynamical systems theory and the evolution of regulatory processes

(2014) Johannes Jaeger et al.   JOURNAL OF PHYSIOLOGY-LONDON

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution

(2014) Cosmas D Arnold et al.   NATURE GENETICS

SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos

(2014) Damjan Cicin-Sain et al.   NUCLEIC ACIDS RESEARCH

A Staging Scheme for the Development of the Scuttle Fly Megaselia abdita

(2014) Karl R. Wotton et al.   PLoS One

A Staging Scheme for the Development of the Moth Midge Clogmia albipunctata

(2014) Eva Jiménez-Guri et al.   PLoS One

A quantitative atlas of Even-skipped and Hunchback expression in Clogmia albipunctata (Diptera: Psychodidae) blastoderm embryos

(2014) Hilde Janssens et al.   EvoDevo

Comparative transcriptomics of early dipteran development

(2013) Eva Jiménez-Guri et al.   BMC GENOMICS

Quantitative dynamics and increased variability of segmentation gene expression in the Drosophila Krüppel and knirps mutants

(2013) Svetlana Surkova et al.   DEVELOPMENTAL BIOLOGY

Reverse-Engineering Post-Transcriptional Regulation of Gap Genes in Drosophila melanogaster

(2013) Kolja Becker et al.   PLoS Computational Biology

Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression

(2013) Mathilde Paris et al.   PLoS Genetics

The segmentation clock: inherited trait or universal design principle?

(2012) David L Richmond et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

(2012) A. C. Oates et al.   DEVELOPMENT

Dissecting sources of quantitative gene expression pattern divergence between Drosophila species

(2012) Zeba Wunderlich et al.   Molecular Systems Biology

A transcriptomic hourglass in plant embryogenesis

(2012) Marcel Quint et al.   NATURE

Medium-Throughput Processing of Whole Mount In Situ Hybridisation Experiments into Gene Expression Domains

(2012) Anton Crombach et al.   PLoS One

A Segmentation Clock with Two-Segment Periodicity in Insects

(2012) A. F. Sarrazin et al.   SCIENCE

A model of developmental evolution: selection, pleiotropy and compensation

(2012) Mihaela Pavlicev et al.   TRENDS IN ECOLOGY & EVOLUTION

Deciphering the transcriptional cis-regulatory code

(2012) J. Omar Yáñez-Cuna et al.   TRENDS IN GENETICS

Efficient Reverse-Engineering of a Developmental Gene Regulatory Network

(2012) Anton Crombach et al.   PLoS Computational Biology

Quantitative Variation in Autocrine Signaling and Pathway Crosstalk in the Caenorhabditis Vulval Network

(2011) Erika Hoyos et al.   CURRENT BIOLOGY

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA

(2011) Nicolás Frankel et al.   NATURE

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence

(2011) Patricia J. Wittkopp et al.   NATURE REVIEWS GENETICS

Episodic radiations in the fly tree of life

(2011) B. M. Wiegmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Formation of the Bicoid Morphogen Gradient Requires Protein Movement from Anteriorly Localized mRNA

(2011) Shawn C. Little et al.   PLOS BIOLOGY

The gap gene network

(2010) Johannes Jaeger   CELLULAR AND MOLECULAR LIFE SCIENCES

Transcriptional Enhancers in Animal Development and Evolution

(2010) Mike Levine   CURRENT BIOLOGY

Maternal activation of gap genes in the hover fly Episyrphus

(2010) S. Lemke et al.   DEVELOPMENT

A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata

(2010) Mónica García-Solache et al.   DEVELOPMENTAL BIOLOGY

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Mutational robustness can facilitate adaptation

(2010) Jeremy A. Draghi et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species

(2010) Robert K. Bradley et al.   PLOS BIOLOGY

Big Genomes Facilitate the Comparative Identification of Regulatory Elements

(2009) Brant K. Peterson et al.   PLoS One

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

Gene Circuit Analysis of the Terminal Gap Gene huckebein

(2009) Maksat Ashyraliyev et al.   PLoS Computational Biology

The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species

(2008) Sangyun Jeong et al.   CELL

The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila

(2008) Thomas M. Williams et al.   CELL

Evidence for a composite anterior determinant in the hover fly Episyrphus balteatus (Syrphidae), a cyclorrhaphan fly with an anterodorsal serosa anlage

(2008) S. Lemke et al.   DEVELOPMENT

Expression and regulation of caudal in the lower cyclorrhaphan fly Megaselia

(2008) Michael Stauber et al.   DEVELOPMENT GENES AND EVOLUTION

bicoidoccurrence and Bicoid-dependenthunchbackregulation in lower cyclorrhaphan flies

(2008) Steffen Lemke et al.   EVOLUTION & DEVELOPMENT

Evolutionary origin of the amnioserosa in cyclorrhaphan flies correlates with spatial and temporal expression changes of zen

(2008) Ab. M. Rafiqi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The gene regulatory logic of transcription factor evolution

(2008) Günter P. Wagner et al.   TRENDS IN ECOLOGY & EVOLUTION

Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation

(2008) Emily E. Hare et al.   PLoS Genetics

Characterization of the Drosophila segment determination morphome

(2007) Svetlana Surkova et al.   DEVELOPMENTAL BIOLOGY