Viral metagenomics as an emerging and powerful tool in veterinary medicine

Metagenomic identification of a novel anellovirus in Pacific harbor seal (Phoca vitulina richardsii) lung samples and its detection in samples from multiple years

(2011) T. F. F. Ng et al.   JOURNAL OF GENERAL VIROLOGY

Evaluation of next-generation sequencing software in mapping and assembly

(2011) Suying Bao et al.   JOURNAL OF HUMAN GENETICS

PathSeq: software to identify or discover microbes by deep sequencing of human tissue

(2011) Aleksandar D Kostic et al.   NATURE BIOTECHNOLOGY

A Sensitive Assay for Virus Discovery in Respiratory Clinical Samples

(2011) Michel de Vries et al.   PLoS One

Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia

(2011) Charles Runckel et al.   PLoS One

Novel, Divergent Simian Hemorrhagic Fever Viruses in a Wild Ugandan Red Colobus Monkey Discovered Using Direct Pyrosequencing

(2011) Michael Lauck et al.   PLoS One

DNA Viruses: The Really Big Ones (Giruses)

(2010) James L. Van Etten et al.   Annual Review of Microbiology

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

Metagenomics for the discovery of novel human viruses

(2010) Patrick Tang et al.   Future Microbiology

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

A window into third-generation sequencing

(2010) E. E. Schadt et al.   HUMAN MOLECULAR GENETICS

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

(2010) Frank J Stewart et al.   ISME Journal

Detection of a Novel Astrovirus in Brain Tissue of Mink Suffering from Shaking Mink Syndrome by Use of Viral Metagenomics

(2010) Anne-Lie Blomström et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Metagenomic Analysis of the Viromes of Three North American Bat Species: Viral Diversity among Different Bat Species That Share a Common Habitat

(2010) E. F. Donaldson et al.   JOURNAL OF VIROLOGY

Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses

(2010) L. Li et al.   JOURNAL OF VIROLOGY

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

(2010) Shaomei He et al.   NATURE METHODS

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

(2010) S. Sun et al.   NUCLEIC ACIDS RESEARCH

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

(2010) Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Frequency Analysis Techniques for Identification of Viral Genetic Data

(2010) V. Trifonov et al.   mBio

A Primer on Metagenomics

(2010) John C. Wooley et al.   PLoS Computational Biology

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Present and future arboviral threats

(2009) Scott C. Weaver et al.   ANTIVIRAL RESEARCH

Methods for comparative metagenomics

(2009) Daniel H Huson et al.   BMC BIOINFORMATICS

Genome assembly reborn: recent computational challenges

(2009) M. Pop   BRIEFINGS IN BIOINFORMATICS

Novel circular DNA viruses in stool samples of wild-living chimpanzees

(2009) O. Blinkova et al.   JOURNAL OF GENERAL VIROLOGY

Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis

(2009) J. G. Victoria et al.   JOURNAL OF VIROLOGY

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

(2009) Christopher D Armour et al.   NATURE METHODS

Laboratory procedures to generate viral metagenomes

(2009) Rebecca V Thurber et al.   Nature Protocols

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Rolling-circle amplification of viral DNA genomes using phi29 polymerase

(2009) Reimar Johne et al.   TRENDS IN MICROBIOLOGY

Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome

(2009) Anne-Lie Blomström et al.   VIRUS RESEARCH

Phi29 polymerase based random amplification of viral RNA as an alternative to random RT-PCR

(2008) Nicolas Berthet et al.   BMC MOLECULAR BIOLOGY

Discovery of a Novel Single-Stranded DNA Virus from a Sea Turtle Fibropapilloma by Using Viral Metagenomics

(2008) T. F. F. Ng et al.   JOURNAL OF VIROLOGY

Single-Molecule DNA Sequencing of a Viral Genome

(2008) T. D. Harris et al.   SCIENCE

Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: Identification of a candidate etiologic agent

(2008) Amy L Kistler et al.   Virology Journal