Identification of QTLs associated with male strobilus abundance in Cryptomeria japonica

It has become increasingly important to understand the factors controlling the abundance of male strobili in Cryptomeria japonica since allergic reactions to the species' pollen have become prevalent in Japan. There is considerable inter-annual variation in the abundance of male strobili, so it is important to investigate and validate quantitative trait loci (QTL) for strobili abundance across different years. Data on third generation families derived from an individual that produces abundant male strobili were studied using Kruskal-Wallis tests and Bayesian regression analysis, resulting in the detection of a single major QTL that was observed over multiple years. This QTL explained between 10.4 and 26.5 % of the phenotypic variation in male strobilus abundance. The consistency and significance of this QTL's effects suggest that it has a major role in male strobilus production in C. japonica, although we also detected other QTLs, indicating that strobilus production is subject to complex and multifactorial regulation. These QTL may also affect precocity because we were unable to separate their effects from the genetic variability in male strobilus production. The major QTL that we detected occurs in a region homologous to a QTL detected in a previous study examining trees with a different genetic heritage following artificial induction of male strobilus production. This result further supports the importance of the QTL detected in the present study. Identifying the important genes in this QTL will therefore significantly increase our understanding of the genetic mechanisms of pollen production in C. japonica.