Ubiquitous Promoter-Localization of Essential Virulence Regulators in Francisella tularensis

A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism

(2014) Alistair B. Russell et al.   Cell Host & Microbe

Differential RNA-seq: the approach behind and the biological insight gained

(2014) Cynthia M Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Coordinate Control of Virulence Gene Expression in Francisella tularensis Involves Direct Interaction between Key Regulators

(2014) A. E. Rohlfing et al.   JOURNAL OF BACTERIOLOGY

Francisella tularensis intracellular survival: to eat or to die

(2013) Monique Barel et al.   MICROBES AND INFECTION

Evidence for Sigma Factor Competition in the Regulation of Alginate Production by Pseudomonas aeruginosa

(2013) Yeshi Yin et al.   PLoS One

Structure and function of CarD, an essential mycobacterial transcription factor

(2013) D. B. Srivastava et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries

(2013) David Skurnik et al.   PLoS Pathogens

SspA up-regulates gene expression of the LEE pathogenicity island by decreasing H-NS levels in enterohemorrhagic Escherichia coli

(2012) Anne-Marie Hansen et al.   BMC MICROBIOLOGY

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs

(2012) I. O. Vvedenskaya et al.   GENES & DEVELOPMENT

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

NanoRNAs Prime Transcription Initiation In Vivo

(2011) Seth R. Goldman et al.   MOLECULAR CELL

The Francisella Intracellular Life Cycle: Toward Molecular Mechanisms of Intracellular Survival and Proliferation

(2011) Audrey Chong et al.   Frontiers in Microbiology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Regulation of Virulence Gene Transcripts by the Francisella novicida Orphan Response Regulator PmrA: Role of Phosphorylation and Evidence of MglA/SspA Interaction

(2010) B. L. Bell et al.   INFECTION AND IMMUNITY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Environmental and intracellular regulation of Francisella tularensis ripA

(2009) James R Fuller et al.   BMC MICROBIOLOGY

CarD Is an Essential Regulator of rRNA Transcription Required for Mycobacterium tuberculosis Persistence

(2009) Christina L. Stallings et al.   CELL

Intracellular biology and virulence determinants ofFrancisella tularensisrevealed by transcriptional profiling inside macrophages

(2009) Tara D. Wehrly et al.   CELLULAR MICROBIOLOGY

Pivotal role of the Francisella tularensis heat-shock sigma factor RpoH

(2009) N. Grall et al.   MICROBIOLOGY-SGM

The Francisella tularensis pathogenicity island encodes a secretion system that is required for phagosome escape and virulence

(2009) Jeffrey R. Barker et al.   MOLECULAR MICROBIOLOGY

Small Molecule Control of Virulence Gene Expression in Francisella tularensis

(2009) James C. Charity et al.   PLoS Pathogens

Identification of fevR, a Novel Regulator of Virulence Gene Expression in Francisella novicida

(2008) A. Brotcke et al.   INFECTION AND IMMUNITY

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

(2008) Anton Valouev et al.   NATURE METHODS

H-NS family members function coordinately in an opportunistic pathogen

(2008) S. Castang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA