Experimental Evolution of an RNA Virus in Wild Birds: Evidence for Host-Dependent Impacts on Population Structure and Competitive Fitness

Inference with viral quasispecies diversity indices: clonal and NGS approaches

(2014) Josep Gregori et al.   BIOINFORMATICS

MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

(2014) Wan-Ping Lee et al.   PLoS One

Host Competence and Helicase Activity Differences Exhibited by West Nile Viral Variants Expressing NS3-249 Amino Acid Polymorphisms

(2014) Stanley A. Langevin et al.   PLoS One

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

(2014) S. K. Gire et al.   SCIENCE

Experimental Infections of Wild Birds with West Nile Virus

(2014) Elisa Pérez-Ramírez et al.   Viruses-Basel

Costs and Benefits of Mutational Robustness in RNA Viruses

(2014) Adi Stern et al.   Cell Reports

Evidence for Co-evolution of West Nile Virus and House Sparrows in North America

(2014) Nisha K. Duggal et al.   PLoS Neglected Tropical Diseases

Arrival of Chikungunya Virus in the New World: Prospects for Spread and Impact on Public Health

(2014) Scott C. Weaver   PLoS Neglected Tropical Diseases

V-Phaser 2: variant inference for viral populations

(2013) Xiao Yang et al.   BMC GENOMICS

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Probabilistic Inference of Viral Quasispecies Subject to Recombination

(2013) Armin Töpfer et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Epidemiology of Human Infections with Avian Influenza A(H7N9) Virus in China

(2013) Qun Li et al.   NEW ENGLAND JOURNAL OF MEDICINE

West Nile Virus Infection in American Robins: New Insights on Dose Response

(2013) Kaci K. VanDalen et al.   PLoS One

Replication Cycle and Molecular Biology of the West Nile Virus

(2013) Margo Brinton   Viruses-Basel

Phylodynamic Analysis of the Emergence and Epidemiological Impact of Transmissible Defective Dengue Viruses

(2013) Ruian Ke et al.   PLoS Pathogens

The effect of strand bias in Illumina short-read sequencing data

(2012) Yan Guo et al.   BMC GENOMICS

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Genome-Wide Patterns of Intrahuman Dengue Virus Diversity Reveal Associations with Viral Phylogenetic Clade and Interhost Diversity

(2012) Poornima Parameswaran et al.   JOURNAL OF VIROLOGY

Internally deleted WNV genomes isolated from exotic birds in New Mexico: Function in cells, mosquitoes, and mice

(2012) Kendra N. Pesko et al.   VIROLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

West Nile Virus Experimental Evolution in vivo and the Trade-off Hypothesis

(2011) Eleanor R. Deardorff et al.   PLoS Pathogens

Population variation of West Nile virus confers a host-specific fitness benefit in mosquitoes

(2010) Kelly A. Fitzpatrick et al.   VIROLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

RNAi Targeting of West Nile Virus in Mosquito Midguts Promotes Virus Diversification

(2009) Doug E. Brackney et al.   PLoS Pathogens

A Global Perspective on the Epidemiology of West Nile Virus

(2007) Laura D. Kramer et al.   Annual Review of Entomology