The Bicoid Class Homeodomain Factors ceh-36/OTX and unc-30/PITX Cooperate in C. elegans Embryonic Progenitor Cells to Regulate Robust Development

De Novo Inference of Systems-Level Mechanistic Models of Development from Live-Imaging-Based Phenotype Analysis

(2014) Zhuo Du et al.   CELL

DNA-Binding Specificities of Human Transcription Factors

(2013) Arttu Jolma et al.   CELL

Complex expression dynamics and robustness in C. elegans insulin networks

(2013) A. D. Ritter et al.   GENOME RESEARCH

Extensive Rewiring and Complex Evolutionary Dynamics in a C. elegans Multiparameter Transcription Factor Network

(2013) John S. Reece-Hoyes et al.   MOLECULAR CELL

A High-Fidelity Cell Lineage Tracing Method for Obtaining Systematic Spatiotemporal Gene Expression Patterns in Caenorhabditis elegans

(2013) Daniel L Mace et al.   G3-Genes Genomes Genetics

A Genome-Scale Resource for In Vivo Tag-Based Protein Function Exploration in C. elegans

(2012) Mihail Sarov et al.   CELL

Embryonic Priming of a miRNA Locus Predetermines Postmitotic Neuronal Left/Right Asymmetry in C. elegans

(2012) Luisa Cochella et al.   CELL

Extracellular leucine-rich repeat proteins are required to organize the apical extracellular matrix and maintain epithelial junction integrity in C. elegans

(2012) V. P. Mancuso et al.   DEVELOPMENT

A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress

(2012) Julia L. Richards et al.   DEVELOPMENTAL BIOLOGY

Replication-Coupled Chromatin Assembly Generates a Neuronal Bilateral Asymmetry in C. elegans

(2011) Shunji Nakano et al.   CELL

Notch and Ras promote sequential steps of excretory tube development in C. elegans

(2011) Ishmail Abdus-Saboor et al.   DEVELOPMENT

Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development

(2011) Max E. Boeck et al.   DEVELOPMENTAL BIOLOGY

A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D

(2010) Anthony Santella et al.   BMC BIOINFORMATICS

Otx-dependent expression of proneural bHLH genes establishes a neuronal bilateral asymmetry in C. elegans

(2010) S. Nakano et al.   DEVELOPMENT

The HMX/NKX homeodomain protein MLS-2 specifies the identity of the AWC sensory neuron type via regulation of the ceh-36 Otx gene in C. elegans

(2010) K. Kim et al.   DEVELOPMENT

Variability in gene expression underlies incomplete penetrance

(2010) Arjun Raj et al.   NATURE

A Multiparameter Network Reveals Extensive Divergence between C. elegans bHLH Transcription Factors

(2009) Christian A. Grove et al.   CELL

Lipocalin signaling controls unicellular tube development in the Caenorhabditis elegans excretory system

(2009) Craig E. Stone et al.   DEVELOPMENTAL BIOLOGY

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

mls-2 and vab-3 control glia development, hlh-17/Olig expression and glia-dependent neurite extension in C. elegans

(2008) S. Yoshimura et al.   DEVELOPMENT

Control of cell cycle timing during C. elegans embryogenesis

(2008) Zhirong Bao et al.   DEVELOPMENTAL BIOLOGY

The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans

(2008) M. C. Ow et al.   GENES & DEVELOPMENT

Imaging individual mRNA molecules using multiple singly labeled probes

(2008) Arjun Raj et al.   NATURE METHODS

Automated analysis of embryonic gene expression with cellular resolution in C. elegans

(2008) John Isaac Murray et al.   NATURE METHODS

The HLH-6 Transcription Factor Regulates C. elegans Pharyngeal Gland Development and Function

(2008) Ryan B. Smit et al.   PLoS Genetics