Minor Loops in Major Folds: Enhancer–Promoter Looping, Chromatin Restructuring, and Their Association with Transcriptional Regulation and Disease
出版年份 2015 全文链接
标题
Minor Loops in Major Folds: Enhancer–Promoter Looping, Chromatin Restructuring, and Their Association with Transcriptional Regulation and Disease
作者
关键词
Chromatin, Gene expression, Genetic loci, Gene regulation, Transcription factors, Transcriptional control, DNA fragment ligation, DNA transcription
出版物
PLoS Genetics
Volume 11, Issue 12, Pages e1005640
出版商
Public Library of Science (PLoS)
发表日期
2015-12-04
DOI
10.1371/journal.pgen.1005640
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments
- (2015) Thomas Cremer et al. FEBS LETTERS
- Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin
- (2015) Elizabeth Ing-Simmons et al. GENOME RESEARCH
- A large genomic deletion leads to enhancer adoption by the lamin B1 gene: a second path to autosomal dominant adult-onset demyelinating leukodystrophy (ADLD)
- (2015) Elisa Giorgio et al. HUMAN MOLECULAR GENETICS
- Histone exchange, chromatin structure and the regulation of transcription
- (2015) Swaminathan Venkatesh et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Enhancer-promoter interaction facilitated by transiently forming G-quadruplexes
- (2015) Hedi Hegyi Scientific Reports
- A Discrete Transition Zone Organizes the Topological and Regulatory Autonomy of the Adjacent Tfap2c and Bmp7 Genes
- (2015) Taro Tsujimura et al. PLoS Genetics
- Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
- (2014) Wulan Deng et al. CELL
- A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
- (2014) Stefan Gröschel et al. CELL
- Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization
- (2014) Iain Williamson et al. GENES & DEVELOPMENT
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
- (2014) Jim R Hughes et al. NATURE GENETICS
- Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells
- (2014) Pierre Therizols et al. SCIENCE
- In search of the determinants of enhancer–promoter interaction specificity
- (2014) Joris van Arensbergen et al. TRENDS IN CELL BIOLOGY
- Architectural proteins: regulators of 3D genome organization in cell fate
- (2014) Elena Gómez-Díaz et al. TRENDS IN CELL BIOLOGY
- Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture
- (2014) Job Dekker Epigenetics & Chromatin
- Single Cell Genomics: Advances and Future Perspectives
- (2014) Iain C. Macaulay et al. PLoS Genetics
- Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci
- (2014) Daan Noordermeer et al. eLife
- Insulator function and topological domain border strength scale with architectural protein occupancy
- (2014) Kevin Van Bortle et al. GENOME BIOLOGY
- The Spatial Organization of the Human Genome
- (2013) Wendy A. Bickmore Annual Review of Genomics and Human Genetics
- Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation
- (2013) Kyong-Rim Kieffer-Kwon et al. CELL
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Enhancer transcripts mark active estrogen receptor binding sites
- (2013) N. Hah et al. GENOME RESEARCH
- eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci
- (2013) Kambiz Mousavi et al. MOLECULAR CELL
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- Chromatin connectivity maps reveal dynamic promoter–enhancer long-range associations
- (2013) Yubo Zhang et al. NATURE
- lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs
- (2013) Liuqing Yang et al. NATURE
- Single-cell sequencing-based technologies will revolutionize whole-organism science
- (2013) Ehud Shapiro et al. NATURE REVIEWS GENETICS
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
- (2013) Job Dekker et al. NATURE REVIEWS GENETICS
- Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub
- (2013) Alexey A. Gavrilov et al. NUCLEIC ACIDS RESEARCH
- Actual Ligation Frequencies in the Chromosome Conformation Capture Procedure
- (2013) Alexey A. Gavrilov et al. PLoS One
- Insulators, long-range interactions, and genome function
- (2012) Jingping Yang et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Anterior-posterior differences in HoxD chromatin topology in limb development
- (2012) I. Williamson et al. DEVELOPMENT
- HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter
- (2012) M. Visser et al. GENOME RESEARCH
- eRNAs Are Required for p53-Dependent Enhancer Activity and Gene Transcription
- (2012) Carlos A. Melo et al. MOLECULAR CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Signals and Combinatorial Functions of Histone Modifications
- (2011) Tamaki Suganuma et al. Annual Review of Biochemistry
- A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells
- (2011) Nasun Hah et al. CELL
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- Functional and Mechanistic Diversity of Distal Transcription Enhancers
- (2011) Michael Bulger et al. CELL
- cis-regulatory mutations are a genetic cause of human limb malformations
- (2011) Julia E. VanderMeer et al. DEVELOPMENTAL DYNAMICS
- Enhancer-adoption as a mechanism of human developmental disease
- (2011) Laura A. Lettice et al. HUMAN MUTATION
- A Barrier-Only Boundary Element Delimits the Formation of Facultative Heterochromatin in Drosophila melanogaster and Vertebrates
- (2011) N. Lin et al. MOLECULAR AND CELLULAR BIOLOGY
- Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
- (2011) Dong Wang et al. NATURE
- Variegated gene expression caused by cell-specific long-range DNA interactions
- (2011) Daan Noordermeer et al. NATURE CELL BIOLOGY
- Enhancer function: new insights into the regulation of tissue-specific gene expression
- (2011) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- Chromatin Dynamics
- (2010) Michael R. Hübner et al. Annual Review of Biophysics
- The transcriptional interactome: gene expression in 3D
- (2010) Stefan Schoenfelder et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Upregulation of c-MYC in cis through a Large Chromatin Loop Linked to a Cancer Risk-Associated Single-Nucleotide Polymorphism in Colorectal Cancer Cells
- (2010) J. B. Wright et al. MOLECULAR AND CELLULAR BIOLOGY
- Widespread transcription at neuronal activity-regulated enhancers
- (2010) Tae-Kyung Kim et al. NATURE
- Gene Positioning
- (2010) C. Ferrai et al. Cold Spring Harbor Perspectives in Biology
- Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
- (2009) I. Hiratani et al. GENOME RESEARCH
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- Epigenetic Temporal Control of Mouse Hox Genes in Vivo
- (2009) N. Soshnikova et al. SCIENCE
- FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription
- (2008) Mathieu Lupien et al. CELL
- Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription
- (2008) Takanori Amano et al. DEVELOPMENTAL CELL
- Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
- (2008) Lars Guelen et al. NATURE
- Transcription and Chromatin Organization of a Housekeeping Gene Cluster Containing an Integrated β-Globin Locus Control Region
- (2008) Daan Noordermeer et al. PLoS Genetics
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