Temperature Stress Mediates Decanalization and Dominance of Gene Expression in Drosophila melanogaster

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

Interchromosomal Communication Coordinates Intrinsically Stochastic Expression Between Alleles

(2014) R. J. Johnston et al.   SCIENCE

Rapid Evolution of Phenotypic Plasticity and Shifting Thresholds of Genetic Assimilation in the Nematode Caenorhabditis remanei

(2014) Kristin L. Sikkink et al.   G3-Genes Genomes Genetics

Genetic Dissection of the Drosophila melanogaster Female Head Transcriptome Reveals Widespread Allelic Heterogeneity

(2014) Elizabeth G. King et al.   PLoS Genetics

A Genetic Network Conferring Canalization to a Bistable Patterning System in Drosophila

(2013) Jackie Gavin-Smyth et al.   CURRENT BIOLOGY

Reproductive and post-reproductive life history of wild-caughtDrosophila melanogasterunder laboratory conditions

(2013) P. Klepsatel et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Inheritance of Gene Expression Level and Selective Constraints on Trans- and Cis-Regulatory Changes in Yeast

(2013) Bernhard Schaefke et al.   MOLECULAR BIOLOGY AND EVOLUTION

Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data

(2013) Ram Vinay Pandey et al.   Molecular Ecology Resources

Allelic expression imbalance screening of genes in chromosome 1q21–24 region to identify functional variants for Type 2 diabetes susceptibility

(2013) Ashis K. Mondal et al.   PHYSIOLOGICAL GENOMICS

Canalization and Control in Automata Networks: Body Segmentation in Drosophila melanogaster

(2013) Manuel Marques-Pita et al.   PLoS One

Intra-Specific Regulatory Variation in Drosophila pseudoobscura

(2013) Anton Suvorov et al.   PLoS One

Statistical significance of combinatorial regulations

(2013) A. Terada et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cryptic Variation in Morphological Evolution: HSP90 as a Capacitor for Loss of Eyes in Cavefish

(2013) N. Rohner et al.   SCIENCE

Histone Variant HTZ1 Shows Extensive Epistasis with, but Does Not Increase Robustness to, New Mutations

(2013) Joshua B. Richardson et al.   PLoS Genetics

Transvection Is Common Throughout the Drosophila Genome

(2012) D. J. Mellert et al.   GENETICS

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression

(2012) A. Goncalves et al.   GENOME RESEARCH

Evolution of gene expression and expression plasticity in long-term experimental populations ofDrosophila melanogastermaintained under constant and variable ethanol stress

(2012) LEV Y. YAMPOLSKY et al.   MOLECULAR ECOLOGY

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

FlyBase: improvements to the bibliography

(2012) Steven J. Marygold et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Genomic Imprinting Absent in Drosophila melanogaster Adult Females

(2012) Joseph D. Coolon et al.   Cell Reports

Genetic architecture of regulatory variation in Arabidopsis thaliana

(2011) X. Zhang et al.   GENOME RESEARCH

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

(2011) Robert Kofler et al.   PLoS One

Function of Rhodopsin in Temperature Discrimination in Drosophila

(2011) W. L. Shen et al.   SCIENCE

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Germ line imprinting in Drosophila: Epigenetics in search of function

(2010) Debashish U. Menon et al.   FLY

Regulatory divergence in Drosophila revealed by mRNA-seq

(2010) C. J. McManus et al.   GENOME RESEARCH

Whole-Genome Expression Plasticity across Tropical and Temperate Drosophila melanogaster Populations from Eastern Australia

(2010) M. T. Levine et al.   MOLECULAR BIOLOGY AND EVOLUTION

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila

(2010) Thilakam Murali et al.   NUCLEIC ACIDS RESEARCH

Hsp90 and Environmental Stress Transform the Adaptive Value of Natural Genetic Variation

(2010) D. F. Jarosz et al.   SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Allele-Specific Chromatin Remodeling in the ZPBP2/GSDMB/ORMDL3 Locus Associated with the Risk of Asthma and Autoimmune Disease

(2009) Dominique J. Verlaan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Global patterns of cis variation in human cells revealed by high-density allelic expression analysis

(2009) Bing Ge et al.   NATURE GENETICS

Decanalization and the origin of complex disease

(2009) Greg Gibson   NATURE REVIEWS GENETICS

A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation

(2009) I. Tirosh et al.   SCIENCE

Canalization of Gene Expression in the Drosophila Blastoderm by Gap Gene Cross Regulation

(2009) Manu et al.   PLOS BIOLOGY

Genetics of gene expression and its effect on disease

(2008) Valur Emilsson et al.   NATURE

Control of thermotactic behavior via coupling of a TRP channel to a phospholipase C signaling cascade

(2008) Young Kwon et al.   NATURE NEUROSCIENCE

Gene–Environment Interaction in Yeast Gene Expression

(2008) Erin N Smith et al.   PLOS BIOLOGY