The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures

A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation

(2014) Sanne Abeln et al.   PLoS One

Temperature-dependent solvation modulates the dimensions of disordered proteins

(2014) R. Wuttke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials

(2014) Fabrizio Pucci et al.   PLoS Computational Biology

Interplay between Folding and Assembly of Fibril-Forming Polypeptides

(2013) Ran Ni et al.   PHYSICAL REVIEW LETTERS

High-pressure NMR reveals close similarity between cold and alcohol protein denaturation in ubiquitin

(2013) N. Vajpai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From protein sequence to dynamics and disorder with DynaMine

(2013) Elisa Cilia et al.   Nature Communications

Construction of a simple biocatalyst using psychrophilic bacterial cells and its application for efficient 3-hydroxypropionaldehyde production from glycerol

(2013) Takahisa Tajima et al.   AMB Express

Extreme thermophiles: moving beyond single-enzyme biocatalysis

(2012) Andrew D Frock et al.   Current Opinion in Chemical Engineering

MAISTAS: a tool for automatic structural evaluation of alternative splicing products

(2011) M. Floris et al.   BIOINFORMATICS

Distinct Hydration Properties of Wild-Type and Familial Point Mutant A53T of α-Synuclein Associated with Parkinson's Disease

(2011) E. Hazy et al.   BIOPHYSICAL JOURNAL

Accounting for Protein-Solvent Contacts Facilitates Design of Nonaggregating Lattice Proteins

(2011) Sanne Abeln et al.   BIOPHYSICAL JOURNAL

Thermo- and Mesostabilizing Protein Interactions Identified by Temperature-Dependent Statistical Potentials

(2010) Benjamin Folch et al.   BIOPHYSICAL JOURNAL

Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces

(2010) Hanka Venselaar et al.   BMC BIOINFORMATICS

Pair potentials for protein folding: Choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

(2010) Marcos R. Betancourt et al.   PROTEIN SCIENCE

Enlarged representative set of protein structures

(2010) Uwe Hobohm et al.   PROTEIN SCIENCE

Selection of representative protein data sets

(2010) Uwe Hobohm et al.   PROTEIN SCIENCE

Solvent Accessible Surface Area of Amino Acid Residues in Globular Proteins: Correlation of Apparent Transfer Free Energies with Experimental Hydrophobicity Scales

(2009) Alexey K. Shaytan et al.   BIOMACROMOLECULES

PDBselect 1992–2009 and PDBfilter-select

(2009) Sven Griep et al.   NUCLEIC ACIDS RESEARCH

Analyses on hydrophobicity and attractiveness of all-atom distance-dependent potentials

(2009) Matsuyuki Shirota et al.   PROTEIN SCIENCE

Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

(2008) A. Zarrine-Afsar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

(2002) Hongyi Zhou et al.   PROTEIN SCIENCE