VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires

MiXCR: software for comprehensive adaptive immunity profiling

(2015) Dmitriy A Bolotin et al.   NATURE METHODS

Prognostic value of deep sequencing method for minimal residual disease detection in multiple myeloma

(2014) J. Martinez-Lopez et al.   BLOOD

Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing

(2014) Mathieu Giraud et al.   BMC GENOMICS

T cell repertoire following autologous stem cell transplantation for multiple sclerosis

(2014) Paolo A. Muraro et al.   JOURNAL OF CLINICAL INVESTIGATION

TCR  -Chain Sharing in Human CD8+ T Cell Responses to Cytomegalovirus and EBV

(2014) V. Venturi et al.   JOURNAL OF IMMUNOLOGY

TCRklass: A New K-String–Based Algorithm for Human and Mouse TCR Repertoire Characterization

(2014) Xi Yang et al.   JOURNAL OF IMMUNOLOGY

Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling

(2014) O. V. Britanova et al.   JOURNAL OF IMMUNOLOGY

The promise and challenge of high-throughput sequencing of the antibody repertoire

(2014) George Georgiou et al.   NATURE BIOTECHNOLOGY

Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells

(2014) Evan W Newell et al.   NATURE BIOTECHNOLOGY

Computational resources for high-dimensional immune analysis from the Human Immunology Project Consortium

(2014) Vladimir Brusic et al.   NATURE BIOTECHNOLOGY

Towards error-free profiling of immune repertoires

(2014) Mikhail Shugay et al.   NATURE METHODS

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing

(2014) I. V. Zvyagin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and clonal selection in the human T-cell repertoire

(2014) Q. Qi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing

(2013) Zeehasham Rasheed et al.   BMC Systems Biology

Biased usage and preferred pairing of  - and  -chains of TCRs specific for an immunodominant gluten epitope in coeliac disease

(2013) S.-W. Qiao et al.   INTERNATIONAL IMMUNOLOGY

Next-generation sequencing and real-time quantitative PCR for minimal residual disease detection in B-cell disorders

(2013) M Ladetto et al.   LEUKEMIA

Comparing CDRH3 diversity captured from secondary lymphoid organs for the generation of recombinant human antibodies

(2013) Sophie Venet et al.   mAbs

The antibody mining toolbox

(2013) Sara D'Angelo et al.   mAbs

MiTCR: software for T-cell receptor sequencing data analysis

(2013) Dmitriy A Bolotin et al.   NATURE METHODS

IgBLAST: an immunoglobulin variable domain sequence analysis tool

(2013) Jian Ye et al.   NUCLEIC ACIDS RESEARCH

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

(2013) Todd J Treangen et al.   GENOME BIOLOGY

Mother and Child T Cell Receptor Repertoires: Deep Profiling Study

(2013) Ekaterina V. Putintseva et al.   Frontiers in Immunology

Huge Overlap of Individual TCR Beta Repertoires

(2013) Mikhail Shugay et al.   Frontiers in Immunology

Deep-sequencing approach for minimal residual disease detection in acute lymphoblastic leukemia

(2012) M. Faham et al.   BLOOD

First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy

(2012) O V Britanova et al.   BONE MARROW TRANSPLANTATION

Bioinformatic approaches for functional annotation and pathway inference in metagenomics data

(2012) C. De Filippo et al.   BRIEFINGS IN BIOINFORMATICS

Shaping of Human Germline IgH Repertoires Revealed by Deep Sequencing

(2012) K. Larimore et al.   JOURNAL OF IMMUNOLOGY

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

(2012) R. K. Colwell et al.   Journal of Plant Ecology

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation

(2011) Ilgar Z. Mamedov et al.   EMBO Molecular Medicine

TCRBV20S1 polymorphism does not influence the susceptibility to type 1 diabetes and multiple sclerosis in the Sardinian population

(2011) Claudio Fozza et al.   IMMUNOGENETICS

Counting absolute numbers of molecules using unique molecular identifiers

(2011) Teemu Kivioja et al.   NATURE METHODS

Detection and quantification of rare mutations with massively parallel sequencing

(2011) I. Kinde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overlap and Effective Size of the Human CD8+ T Cell Receptor Repertoire

(2010) H. S. Robins et al.   Science Translational Medicine

Comprehensive assessment of T-cell receptor  -chain diversity in    T cells

(2009) H. S. Robins et al.   BLOOD