Review
Oncology
Solomon O. Rotimi, Oluwakemi A. Rotimi, Bodour Salhia
Summary: Cancer is becoming a leading cause of mortality in Africa, but there is a significant lack of research on cancer genomics in African populations, highlighting the need for more efforts in this area.
FRONTIERS IN ONCOLOGY
(2021)
Article
Oncology
Enrico Moiso, Paolo Provero
Summary: This study systematically investigates the associations between metabolic alterations and other tumor features using a comprehensive collection of data. The results provide a guide for formulating specific mechanistic hypotheses and contribute to our understanding of the role of metabolic alterations in cancer and the development of precision therapeutic strategies.
Article
Entomology
Fu-Chyun Chu, Pei-Shan Wu, Sofia Pinzi, Nathaniel Grubbs, Allen Carson Cohen, Marce D. Lorenzen
Summary: In this study, an optimized rearing system was developed for Western corn rootworm (WCR) functional genomics research, which enables the collection of preblastoderm embryos for microinjection and large larvae and pupae for phenotypic screening. The WCR life cycle takes approximately 42 days, with a survival rate of 67% over one year. This study provides a model for the development of new rearing systems and highly controlled processes.
Article
Multidisciplinary Sciences
Xinmiao Zhang, Jiajia Feng, Ruolin Zhao, Hailiang Cheng, Javaria Ashraf, Qiaolian Wang, Limin Lv, Youping Zhang, Guoli Song, Dongyun Zuo
Summary: The GhNRT2.1e gene in G. hirsutum was found to be up-regulated under low nitrate conditions, contributing to increased nitrate uptake and transport, and thereby improving nitrogen use efficiency in cotton.
Article
Dentistry, Oral Surgery & Medicine
B. He, V. Kram, T. Furusawa, O. Duverger, E. Y. Chu, R. Nanduri, M. Ishikawa, P. Zhang, B. A. Amendt, J. S. Lee, M. Bustin
Summary: The study suggests that HMGN proteins play a role in regulating ameloblast differentiation and enamel mineralization by modulating lineage-specific chromatin accessibility and transcription factor binding to ameloblast regulatory sites. The absence of HMGN proteins in mice leads to faster ameloblast differentiation and increased enamel deposition rate in molars and incisors.
JOURNAL OF DENTAL RESEARCH
(2023)
Article
Multidisciplinary Sciences
Kaiyue Zhou, Suzan Arslanturk, Douglas B. Craig, Elisabeth Heath, Sorin Draghici
Summary: Prostate cancer is the second leading cause of cancer death in American men, and over-diagnosis and over-treatment of low-risk patients can have significant long-term effects on quality of life. Cross-cancer disease learning helps discover important biomarkers, enriches study populations, and identifies important commonalities across diseases.
SCIENTIFIC REPORTS
(2021)
Article
Biochemistry & Molecular Biology
Robert J. Hall, Jonathan O'Loughlin, Charlotte K. Billington, Dhruma Thakker, Ian P. Hall, Ian Sayers
Summary: GPR126 is an adhesion G protein-coupled receptor associated with lung function and COPD, with identified SNPs affecting its function/expression. Activation of GPR126 in airway cells leads to downstream gene/pathway alterations, suggesting a role in airway remodeling. Further research is warranted to elucidate the exact mechanisms involved.
Article
Biochemical Research Methods
Aman Chandra Kaushik, Yan-Jing Wang, Xiangeng Wang, Dong-Qing Wei
Summary: The study revealed significant differences in the genomics, transcriptomics, methylomics, and molecular dynamics between KRAS and TP53 mutations from the wild type in PAAD, with the prognosis of pancreatic cancer directly linked to specific KRAS mutations and protein stability. Screened drugs show potential effectiveness for PAAD patients.
BRIEFINGS IN BIOINFORMATICS
(2021)
Editorial Material
Multidisciplinary Sciences
Orsolya Barabas, Phoebe A. A. Rice
Summary: CRISPR-Cas is a bacterial defense system that can either protect host cells by attacking invading DNA or assist in the safe insertion of DNA into the genome. The structures of this specific type of CRISPR-Cas system have been successfully visualized.
Editorial Material
Multidisciplinary Sciences
Felicia Kuperwaser, Itai Yanai
Summary: A comprehensive cell atlas of gene expression and regulation in human embryos has provided a unique opportunity for innovative investigation of development through multi-organ and multi-modal analysis.
Editorial Material
Multidisciplinary Sciences
Fahad Rashid, James Berger
Summary: High-resolution structures of bacterial Rho protein in complex with an RNA polymerase enzyme and partner proteins confirm the long-held model of Rho's role in gene transcription termination.
Article
Oncology
Johanne Ahrenfeldt, Ditte S. Christensen, Mateo Sokac, Judit Kisistok, Nicholas McGranahan, Nicolai J. Birkbak
Summary: The study found that metastatic cancers have a higher proportion of clonal mutations and an enrichment of early mutations in p53 and RTK/KRAS pathways. However, there was no significant difference in event type or timing between primary and metastatic cancers, indicating that the selective pressure driving cancer development on a genomic level mainly focuses on alterations that increase proliferation.
Article
Oncology
Chie Kikutake, Mikita Suyama
Summary: This study elucidated the mechanism by which whole-genome doubling (WGD) affects prognosis in cancer patients using sequencing data. It was found that WGD was associated with longer LOH regions and LOH in chr17, which were in turn associated with poor prognosis. In non-WGD samples, the number of mutations in tumor suppressor genes was also associated with prognosis. Different treatment strategies may be needed for WGD and non-WGD samples.
Editorial Material
Multidisciplinary Sciences
Pavel V. Baranov, John F. Atkins
Summary: Messenger RNA has 64 possible codons, three of which usually stop protein synthesis. However, certain organisms can utilize all codons to determine amino acids, partially due to an unexpected characteristic of transfer RNA.
Editorial Material
Multidisciplinary Sciences
Leonid A. Mirny
Summary: The study reveals that loop extrusion, essential for chromosome folding and function, also plays a crucial part in repairing double-strand DNA breaks.
Article
Chemistry, Medicinal
Wenwen Zang, Yujun Hao, Zhenghe Wang, Weiping Zheng
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
(2015)
Review
Biochemical Research Methods
Emily H. Bowler, Zhenghe Wang, Rob M. Ewing
EXPERT REVIEW OF PROTEOMICS
(2015)
Meeting Abstract
Oncology
Zhenghe Wang
MOLECULAR CANCER RESEARCH
(2016)
Article
Oncology
Yiqing Zhao, Anthony Scott, Peng Zhang, Yujun Hao, Xiujing Feng, Saigopal Somasundaram, Ahmad M. Khalil, Joseph Willis, Zhenghe Wang
Review
Biochemistry & Molecular Biology
Anthony Scott, Zhenghe Wang
BIOSCIENCE REPORTS
(2011)
Article
Multidisciplinary Sciences
Xiujing Feng, Anthony Scott, Yong Wang, Lan Wang, Yiqing Zhao, Stephanie Doerner, Masanobu Satake, Colleen M. Croniger, Zhenghe Wang
Letter
Biochemistry & Molecular Biology
Yongyang Bao, J. Eva Selfridge, Janet Wang, Yiqing Zhao, Junqi Cui, Kishore Guda, Zhenghe Wang, Yanbo Zhu
JOURNAL OF GENETICS AND GENOMICS
(2019)
Article
Biochemistry & Molecular Biology
Yicheng Chen, Yiqing Zhao, David L. Bajor, Zhenghe Wang, J. Eva Selfridge
JOURNAL OF GENETICS AND GENOMICS
(2020)
Article
Biochemistry & Molecular Biology
Yamu Li, Zhonghua Liu, Yiqing Zhao, Jie Yang, Tsan Sam Xiao, Ronald A. Conlon, Zhenghe Wang
Summary: This study reveals that the ATP-binding activity of ERBB3 pseudokinase regulates PD-L1 gene expression in colorectal cancers. ERBB3 modulates IFN-g-induced PD-L1 expression through the IRS1-PI3K-PDK1-RSK-CREB signaling axis. Additionally, ERBB3 mutations could serve as predictive biomarkers for tumors amenable to immune checkpoint therapy.
Article
Chemistry, Medicinal
Xiao Hu, Yanhua He, Liping Wu, Yujun Hao, Zhenghe Wang, Weiping Zheng
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
(2017)
Article
Cell Biology
Pierre E. Queiroz de Oliveira, Lin Zhang, Zhenghe Wang, John S. Lazo
Review
Pharmacology & Pharmacy
Patrick C. Ma, Xiaodong Zhang, Zhenghe J. Wang
Review
Biochemistry & Molecular Biology
ZH Wang, MF Christman
CELL BIOCHEMISTRY AND BIOPHYSICS
(2001)