Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction
出版年份 2015 全文链接
标题
Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction
作者
关键词
Metabolic networks, Yeast and fungal models, Gene prediction, Metabolites, Network analysis, Simulation and modeling, Metabolic processes, Exchange reactions
出版物
PLoS Computational Biology
Volume 11, Issue 11, Pages e1004530
出版商
Public Library of Science (PLoS)
发表日期
2015-11-14
DOI
10.1371/journal.pcbi.1004530
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Transparency in metabolic network reconstruction enables scalable biological discovery
- (2015) Benjamin D Heavner et al. CURRENT OPINION IN BIOTECHNOLOGY
- Understanding carbon catabolite repression in Escherichia coli using quantitative models
- (2015) A. Kremling et al. TRENDS IN MICROBIOLOGY
- fastGapFill: efficient gap filling in metabolic networks
- (2014) Ines Thiele et al. BIOINFORMATICS
- Optimizing genome-scale network reconstructions
- (2014) Jonathan Monk et al. NATURE BIOTECHNOLOGY
- Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models
- (2014) Matthew N. Benedict et al. PLoS Computational Biology
- Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species
- (2014) Esa Pitkänen et al. PLoS Computational Biology
- Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection
- (2014) Benjamin VanderSluis et al. GENOME BIOLOGY
- Assimilating genome-scale metabolic reconstructions with modelBorgifier
- (2013) John T. Sauls et al. BIOINFORMATICS
- Path2Models: large-scale generation of computational models from biochemical pathway maps
- (2013) Finja Büchel et al. BMC Systems Biology
- Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling
- (2013) Tobias Österlund et al. BMC Systems Biology
- Dead End Metabolites - Defining the Known Unknowns of the E. coli Metabolic Network
- (2013) Amanda Mackie et al. PLoS One
- Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance
- (2013) Benjamin D. Heavner et al. Database-The Journal of Biological Databases and Curation
- Yeast 5 – an expanded reconstruction of the Saccharomyces cerevisiae metabolic network
- (2012) Benjamin D Heavner et al. BMC Systems Biology
- Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions
- (2012) Jeffrey D Orth et al. BMC Systems Biology
- Nutritional requirements of the BY series ofSaccharomyces cerevisiaestrains for optimum growth
- (2012) Michael Hanscho et al. FEMS YEAST RESEARCH
- A constraint-based model analysis of the metabolic consequences of increased NADPH oxidation in Saccharomyces cerevisiae
- (2012) Magalie Celton et al. METABOLIC ENGINEERING
- YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
- (2012) Rama Balakrishnan et al. Database-The Journal of Biological Databases and Curation
- Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data
- (2011) Ali R Zomorrodi et al. BMC Systems Biology
- Engineering strategy of yeast metabolism for higher alcohol production
- (2011) Fumio Matsuda et al. Microbial Cell Factories
- An integrated approach to characterize genetic interaction networks in yeast metabolism
- (2011) Balázs Szappanos et al. NATURE GENETICS
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- Why does yeast ferment? A flux balance analysis study
- (2010) Evangelos Simeonidis et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
- (2010) Jan Schellenberger et al. BMC BIOINFORMATICS
- Computationally efficient flux variability analysis
- (2010) Steinn Gudmundsson et al. BMC BIOINFORMATICS
- Further developments towards a genome-scale metabolic model of yeast
- (2010) Paul D Dobson et al. BMC Systems Biology
- The biomass objective function
- (2010) Adam M Feist et al. CURRENT OPINION IN MICROBIOLOGY
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- BioMet Toolbox: genome-wide analysis of metabolism
- (2010) M. Cvijovic et al. NUCLEIC ACIDS RESEARCH
- Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network
- (2010) Tommi Aho et al. PLoS One
- Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology
- (2009) Caroline B. Milne et al. Biotechnology Journal
- Connecting extracellular metabolomic measurements to intracellular flux states in yeast
- (2009) Monica L Mo et al. BMC Systems Biology
- Systems-Level Engineering of Nonfermentative Metabolism in Yeast
- (2009) C. J. Kennedy et al. GENETICS
- The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism
- (2008) Intawat Nookaew et al. BMC Systems Biology
- A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
- (2008) Markus J Herrgård et al. NATURE BIOTECHNOLOGY
- Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions
- (2008) Evan S Snitkin et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More