Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model

Modeling dynamic functional relationship networks and application to ex vivo human erythroid differentiation

(2014) Fan Zhu et al.   BIOINFORMATICS

Predicting dynamic signaling network response under unseen perturbations

(2014) Fan Zhu et al.   BIOINFORMATICS

Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization

(2014) Muhammad Ammad-ud-din et al.   Journal of Chemical Information and Modeling

Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines

(2014) Paul Geeleher et al.   GENOME BIOLOGY

Adaptive Prediction Model in Prospective Molecular Signature–Based Clinical Studies

(2013) Guanghua Xiao et al.   CLINICAL CANCER RESEARCH

Inconsistency in large pharmacogenomic studies

(2013) Benjamin Haibe-Kains et al.   NATURE

Machine Learning Prediction of Cancer Cell Sensitivity to Drugs Based on Genomic and Chemical Properties

(2013) Michael P. Menden et al.   PLoS One

Predicting drug-target interactions from chemical and genomic kernels using Bayesian matrix factorization

(2012) M. Gonen   BIOINFORMATICS

Personalized Medicine: Patient-Predictive Panel Power

(2012) Paul Workman et al.   CANCER CELL

Systematic identification of genomic markers of drug sensitivity in cancer cells

(2012) Mathew J. Garnett et al.   NATURE

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

(2012) Jordi Barretina et al.   NATURE

Preparing for Precision Medicine

(2012) Reza Mirnezami et al.   NEW ENGLAND JOURNAL OF MEDICINE

Promise of personalized omics to precision medicine

(2012) Rui Chen et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes

(2012) Yuanfang Guan et al.   PLoS Computational Biology

Robust Gene Expression Signature from Formalin-Fixed Paraffin-Embedded Samples Predicts Prognosis of Non-Small-Cell Lung Cancer Patients

(2011) Y. Xie et al.   CLINICAL CANCER RESEARCH

Systematic exploration of synergistic drug pairs

(2011) M. Cokol et al.   Molecular Systems Biology

Predicting in vitro drug sensitivity using Random Forests

(2010) Gregory Riddick et al.   BIOINFORMATICS

PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints

(2010) Chun Wei Yap   JOURNAL OF COMPUTATIONAL CHEMISTRY

An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer

(2010) Juan Cui et al.   NUCLEIC ACIDS RESEARCH

PubChem: a public information system for analyzing bioactivities of small molecules

(2009) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Drug targeting and tumor heterogeneity

(2008) You Han Bae   JOURNAL OF CONTROLLED RELEASE