Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions

Prediction of protein-protein interaction sites from weakly homologous template structures using meta-threading and machine learning

(2015) Surabhi Maheshwari et al.   JOURNAL OF MOLECULAR RECOGNITION

Inhibition of α-helix-mediated protein–protein interactions using designed molecules

(2013) Valeria Azzarito et al.   Nature Chemistry

Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information

(2013) Anne Lopes et al.   PLoS Computational Biology

A holistic in silico approach to predict functional sites in protein structures

(2012) Joan Segura et al.   BIOINFORMATICS

Predicting protein-protein interface residues using local surface structural similarity

(2012) Rafael A Jordan et al.   BMC BIOINFORMATICS

Computational Drug Design Targeting Protein-Protein Interactions

(2012) Rachelle J. Bienstock   CURRENT PHARMACEUTICAL DESIGN

A Protein Solvation Model Based on Residue Burial

(2012) Nicoletta Ceres et al.   Journal of Chemical Theory and Computation

2P2Idb: a structural database dedicated to orthosteric modulation of protein–protein interactions

(2012) Marie Jeanne Basse et al.   NUCLEIC ACIDS RESEARCH

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams

(2011) Joan Segura et al.   BMC BIOINFORMATICS

PredUs: a web server for predicting protein interfaces using structural neighbors

(2011) Q. C. Zhang et al.   NUCLEIC ACIDS RESEARCH

Moonlighting proteins: An intriguing mode of multitasking

(2010) Daphne H.E.W. Huberts et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

In Silico Prediction of Binding Sites on Proteins

(2010) Simon Leis et al.   CURRENT MEDICINAL CHEMISTRY

A Simple Definition of Structural Regions in Proteins and Its Use in Analyzing Interface Evolution

(2010) Emmanuel D. Levy   JOURNAL OF MOLECULAR BIOLOGY

Use of allostery to identify inhibitors of calmodulin-induced activation of Bacillus anthracis edema factor

(2010) E. Laine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein interface conservation across structure space

(2010) Q. C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein-protein docking benchmark version 4.0

(2010) Howook Hwang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Efalizumab binding to the LFA-1  L I domain blocks ICAM-1 binding via steric hindrance

(2009) S. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling

(2009) Stefan Engelen et al.   PLoS Computational Biology

Principles of Protein−Protein Interactions: What are the Preferred Ways For Proteins To Interact?

(2008) Ozlem Keskin et al.   CHEMICAL REVIEWS

Built-in loops allow versatility in domain-domain interactions: Lessons from self-interacting domains

(2008) E. Akiva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein-protein docking benchmark version 3.0

(2008) Howook Hwang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS