Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation

Nonstochastic Reprogramming from a Privileged Somatic Cell State

(2014) Shangqin Guo et al.   CELL

Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells

(2014) Zakary S. Singer et al.   MOLECULAR CELL

Emergence of amplitude and oscillation death in identical coupled oscillators

(2014) Wei Zou et al.   PHYSICAL REVIEW E

Identifying and mapping cell-type-specific chromatin programming of gene expression

(2014) Troels T. Marstrand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Defining an essential transcription factor program for naive pluripotency

(2014) S.- J. Dunn et al.   SCIENCE

Epigenetics Decouples Mutational from Environmental Robustness. Did It Also Facilitate Multicellularity?

(2014) Saurabh Gombar et al.   PLoS Computational Biology

Induction of Pluripotency in Mouse Somatic Cells with Lineage Specifiers

(2013) Jian Shu et al.   CELL

Quantifying Waddington landscapes and paths of non-adiabatic cell fate decisions for differentiation, reprogramming and transdifferentiation

(2013) C. Li et al.   Journal of the Royal Society Interface

Deterministic direct reprogramming of somatic cells to pluripotency

(2013) Yoach Rais et al.   NATURE

Generalizing the transition from amplitude to oscillation death in coupled oscillators

(2013) Wei Zou et al.   PHYSICAL REVIEW E

Minimal model for stem-cell differentiation

(2013) Yusuke Goto et al.   PHYSICAL REVIEW E

Epigenetic Feedback Regulation Accelerates Adaptation and Evolution

(2013) Chikara Furusawa et al.   PLoS One

Oscillatory Control of Factors Determining Multipotency and Fate in Mouse Neural Progenitors

(2013) I. Imayoshi et al.   SCIENCE

Time Scales in Epigenetic Dynamics and Phenotypic Heterogeneity of Embryonic Stem Cells

(2013) Masaki Sasai et al.   PLoS Computational Biology

H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs

(2012) Jiekai Chen et al.   NATURE GENETICS

Induced Pluripotent Stem Cells: Emerging Techniques for Nuclear Reprogramming

(2011) Ji Woong Han et al.   ANTIOXIDANTS & REDOX SIGNALING

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

A General Model for Binary Cell Fate Decision Gene Circuits with Degeneracy: Indeterminacy and Switch Behavior in the Absence of Cooperativity

(2011) Mircea Andrecut et al.   PLoS One

Oscillatory Protein Expression Dynamics Endows Stem Cells with Robust Differentiation Potential

(2011) Narito Suzuki et al.   PLoS One

Quantifying the Waddington landscape and biological paths for development and differentiation

(2011) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global epigenetic changes during somatic cell reprogramming to iPS cells

(2011) Anna Mattout et al.   Journal of Molecular Cell Biology

Epigenetic memory in induced pluripotent stem cells

(2010) K. Kim et al.   NATURE

Linking cell signaling and the epigenetic machinery

(2010) Helai P Mohammad et al.   NATURE BIOTECHNOLOGY

Open chromatin in pluripotency and reprogramming

(2010) Alexandre Gaspar-Maia et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Cooperative differentiation through clustering in multicellular populations

(2009) A. Koseska et al.   JOURNAL OF THEORETICAL BIOLOGY

Elite and stochastic models for induced pluripotent stem cell generation

(2009) Shinya Yamanaka   NATURE

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

Ultrasensitive gene regulation by positive feedback loops in nucleosome modification

(2008) Kim Sneppen et al.   Molecular Systems Biology