Review
Immunology
Andrew Getahun
Summary: This review article focuses on the B cell-intrinsic mechanisms that prevent the activation of autoreactive B cells in the periphery. It discusses the establishment of inhibitory signaling circuits, specifically the Lyn-SHIP-1-SHP-1 axis, and how disruptions of these circuits can contribute to the development of autoimmunity.
IMMUNOLOGICAL REVIEWS
(2022)
Article
Biochemistry & Molecular Biology
Guoying Zhao, Qian Cheng, Yuting Zhao, Feifei Wu, Bangbang Mu, Jiping Gao, Liu Yang, Jingli Yan, Hanfeng Zhang, Xing Cui, Qinqin Chen, Fangxiao Lu, Qianqian Ao, Asma Amdouni, Yuan-Qing Jiang, Bo Yang
Summary: This study identifies ABA-responsive element binding factors (ABFs) as upstream transcription factors of MAPKKK18 expression, which is involved in abiotic stress priming, drought tolerance, and leaf senescence. ABF2, ABF3, and ABF4 bind to ABA-responsive elements in the promoter of MAPKKK18 and activate its expression. Mutants of mapkkk18 exhibit delayed leaf senescence, while over-expression of ABF2, ABF3, and ABF4 in the background of mapkkk18 phenocopies the stay-green phenotype and reduces the expression of ABF target genes. These findings demonstrate that ABF2, ABF3, and ABF4 act as transcriptional regulators of MAPKKK18 and suggest a role of ABA in priming leaf senescence through ABF-induced expression of MAPKKK18.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2023)
Review
Medicine, General & Internal
Jiawen Chen, Yafei Li, Chong Du, Tianwen Wei, Tiankai Shan, Liansheng Wang
Summary: Protein kinases play a crucial role in cardiovascular diseases and their study is of great significance for heart repair and treatment.
CHINESE MEDICAL JOURNAL
(2022)
Article
Cell Biology
Agnes S. Pascual, Jose L. Rapanan, Chandana K. Uppalapati, Kimbal E. Cooper, Kathryn J. Leyva, Elizabeth E. Hull
Summary: Studies suggest that the appearance of fibroblasts and the production of extracellular matrix in fibrosis associated with chronic disease may be caused by differentiation of progenitor cells, response to chronic inflammation, or a combination of both, rather than the EMT transcriptional program. The EMT process in zebrafish keratocytes involves nuclear accumulation of twist and snail/slug transcription factors and is reversed by the addition of ROCK and TGF beta R inhibitors. The requirement for ROCK activation on noncompliant substrata suggests that EMT in terminally differentiated cells like keratocytes may not occur in vivo.
CELL BIOLOGY INTERNATIONAL
(2021)
Article
Biochemistry & Molecular Biology
Kristin Ho, Niels Bradshaw
Summary: This study addresses the mechanism by which protein phosphatase activity targets specific substrates under the correct conditions. The research findings suggest that PP2C family of phosphatases integrate substrate recognition with activating signals to control metal-cofactor binding and substrate dephosphorylation, providing a mechanism for producing specific responses by acting on the correct substrates.
JOURNAL OF BIOLOGICAL CHEMISTRY
(2021)
Article
Cell Biology
Luis Arpa, Carlos Batlle, Peijin Jiang, Carme Caelles, Jorge Lloberas, Antonio Celada
Summary: IL-4 is a key activator of macrophage alternative activation and induces an anti-inflammatory phenotype. The IL-4 signaling pathway involves STAT-6 and MAPK family members. We found that JNK-1 activation regulates the expression of genes involved in alternative activation in response to IL-4.
Review
Biochemistry & Molecular Biology
Hui-Liang Zhang, Xiao-Chuan Wang, Rong Liu
Summary: Zinc is crucial for human growth and development, particularly in regulating the mechanisms of neurodegenerative diseases.
Review
Medicine, Research & Experimental
Xia Zhao, Li Xiong, Lingyu She, Liwei Li, Ping Huang, Guang Liang
Summary: Protein tyrosine phosphatases (PTPs) play a significant role in the pathogenesis of Alzheimer's disease (AD) and are closely related to the accumulation of abnormally phosphorylated proteins.
BIOMEDICINE & PHARMACOTHERAPY
(2022)
Review
Biochemistry & Molecular Biology
Malathi Bheri, Swati Mahiwal, Sibaji K. Sanyal, Girdhar K. Pandey
Summary: Protein phosphorylation and dephosphorylation are important reversible post-translational modifications, with protein phosphatases playing a key role in signaling networks. The classification and mechanism of phosphatases in plant systems still require further investigation.
Article
Multidisciplinary Sciences
Xiaoyu Guo, Xue Ding, Juan Dong
Summary: In this study, the authors found that BSL proteins in Arabidopsis have different functions in the cell cortex and nucleus, regulating stomatal formation through the activation or deactivation of different signaling pathways.
NATURE COMMUNICATIONS
(2022)
Review
Oncology
Adhiraj Roy, Shivi Chauhan, Sujata Bhattacharya, Vibhuti Jakhmola, Komal Tyagi, Abha Sachdeva, Abdul Wasai, Supratim Mandal
Summary: Cancer is a deadly pathology with millions of new cases and deaths worldwide. Despite advanced therapies, cancer remains fatal due to lack of early prognostic biomarkers, therapy resistance, and the need for novel drug targets.
JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY
(2023)
Review
Biochemistry & Molecular Biology
Ruben de Dios, Eduardo Santero, Francisca Reyes-Ramirez
Summary: The bacterial core RNA polymerase can interact with different sigma factors to form a variety of holoenzymes, aiding in coordinating gene expression. Extracytoplasmic function sigma factors (ECFs) play a role in stress responses and have been classified into 157 groups based on their phylogenetic relationships and genomic context, showcasing their diversity. This study focuses on 55 experimentally studied ECF groups, categorizing them into two broad classes of stress responses, and discusses the mechanisms controlling their production and activity for a functional stress response.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Rheumatology
Francesca Romana Spinelli, Robert A. Colbert, Massimo Gadina
Summary: JAK1 is a key player in the signaling pathway of various cytokines, and selective JAK1 inhibitors are potential treatments for inflammatory diseases like rheumatoid arthritis and axial spondyloarthritis. While JAK1 is crucial for bone homeostasis and synovial inflammation, its role in new bone formation in axial spondyloarthritis needs further investigation.
Review
Immunology
Weiyuan Wang, Melanie Cristina Lopez McDonald, Christine Kim, Mirielle Ma, Zetao (Tommy) Pan, Charlotte Kaufmann, David A. Frank
Summary: STATs are a family of transcription factors involved in various cellular processes. Dysregulation of STATs in tumors directly contributes to cancer pathogenesis. STAT1 suppresses tumor formation while STAT3 promotes tumor development. This review investigates the specific roles of STAT1 and STAT3 in both normal physiology and cancer biology, explores their interactions, and provides insights into therapeutic strategies by modulating their transcriptional activity.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Emmanuel Baudouin, Juliette Puyaubert, Patrice Meimoun, Melisande Blein-Nicolas, Marlene Davanture, Michel Zivy, Christophe Bailly
Summary: This study investigated the remodeling of Arabidopsis seed phosphoproteome during imbibition using stable isotope dimethyl labeling and nanoLC-MS/MS analysis. The study identified a large repertoire of phosphopeptides and phosphoproteins involved in seed germination control, including protein kinases and key regulators like DOG1. Gene ontology analysis revealed their involvement in various biological processes. The study provides evidence of the major role of phosphosignaling in the regulation of Arabidopsis seed germination.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Hematology
Xian-Hui Dong, Zhi-Feng Lu, Chun-Min Kang, Xue-Heng Li, Kim E. Haworth, Xin Ma, Jing-Bo Lu, Xue-Hui Liu, Fu-Chun Fang, Claire S. Wang, John H. Ye, Lei Zheng, Qian Wang, Shu Ye, Yan-Wei Hu
Summary: RP11-728F11.4 plays a role in promoting atherosclerosis by influencing cholesterol homeostasis and proinflammatory molecule production, indicating its potential as a therapeutic target.
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY
(2021)
Article
Medicine, Research & Experimental
Yequn Chen, Nianling Xiong, Xin Wang, Shiwan Wu, Liangli Hong, Xiru Huang, Chang Chen, Weiping Li, Bin Wang, Shu Ye, Xuerui Tan
Summary: This study aims to verify the efficacy of atorvastatin in reducing in-hospital mortality of AAD patients. It is designed to provide a new means of improving survival as a complement to conventional drug therapy.
Article
Peripheral Vascular Disease
Yequn Chen, Nianling Xiong, Jiaxin Xiao, Xiru Huang, Rongbing Chen, Shu Ye, Xuerui Tan
Summary: This study found an association between uterine fibroids and an increased prevalence of hypertension, suggesting that uterine fibroids may impact the occurrence of hypertension.
HYPERTENSION RESEARCH
(2022)
Article
Multidisciplinary Sciences
David Stacey, Lingyan Chen, Paulina J. Stanczyk, Joanna M. M. Howson, Amy M. Mason, Stephen Burgess, Stephen MacDonald, Jonathan Langdown, Harriett McKinney, Kate Downes, Neda Farahi, James E. Peters, Saonli Bas, James S. Pankowf, Weihong Tang, Nathan Pankratz, Maria Sabater-Llear, Paul S. de Vries, Nicholas L. Smith, Amy D. Gelinas, Daniel J. Schneider, Nebojsa Janjic, Nilesh J. Samani, Shu Ye, Charlotte Summers, Edwin R. Chilvers, John Danesh, Dirk S. Paul
Summary: This study provides a framework to reveal genetic cross-disease associations at the PROCR vascular disease locus, linking PROCR-219Gly to coronary artery disease through anti-inflammatory mechanisms and to venous thromboembolism through pro-thrombotic mechanisms.
NATURE COMMUNICATIONS
(2022)
Article
Cell Biology
Chang Chen, Yequn Chen, Jiaxin Xiao, Yanhong Zhang, Zhaorui Yang, Peixuan Yang, Nan Lu, Kaihong Yi, Xiaojun Chen, Shaoxin Chen, Mary Clare O'Gara Msc, Michael O'Meara, Shu Ye, Xuerui Tan
Summary: There is an association between impaired fasting glucose level and a predisposition to severe coronary artery disease indicated by triple vessel disease or myocardial infarction.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Cardiac & Cardiovascular Systems
Charles U. Solomon, David G. McVey, Catherine Andreadi, Peng Gong, Lenka Turner, Paulina J. Stanczyk, Sonja Khemiri, Julie C. Chamberlain, Wei Yang, Tom R. Webb, Christopher P. Nelson, Nilesh J. Samani, Shu Ye
Summary: This comprehensive analysis shows that a large percentage of CAD loci can modulate gene expression in VSMCs and influence VSMC behavior. Several candidate causal genes identified are likely to be druggable and thus represent potential therapeutic targets.
Article
Cardiac & Cardiovascular Systems
Elisavet Karamanavi, David G. McVey, Sander W. van der Laan, Paulina J. Stanczyk, Gavin E. Morris, Yifan Wang, Wei Yang, Kenneth Chan, Robin N. Poston, Jun Luo, Xinmiao Zhou, Peng Gong, Peter D. Jones, Junjun Cao, Renata B. Kostogrys, Tom R. Webb, Gerard Pasterkamp, Haojie Yu, Qingzhong Xiao, Peter A. Greer, Emma J. Stringer, Nilesh J. Samani, Shu Ye
Summary: The study discovered that the CAD risk variants at the 15q26.1 locus reduce FES expression in monocytes, leading to larger atherosclerotic plaques with more monocytes/macrophages and smooth muscle cells. This finding suggests that enhancing FES activity could be a novel therapeutic approach for CAD intervention.
CIRCULATION RESEARCH
(2022)
Article
Multidisciplinary Sciences
Mark F. Bird, Barbara Gallacher-Horley, John McDonald, David G. McVey, Fatin Al-Janabi, Remo Guerrini, Girolamo Calo, Shu Ye, Jonathan P. Thompson, David G. Lambert
Summary: Sepsis is a dysregulated host response to infection that can cause widespread effects on other organs. The study found that N/OFQ receptors are expressed on immune cells and vascular endothelial cells, and LPS/PepG treatment increases functional expression of NOP receptors in vascular endothelium. These findings may contribute to our understanding of the hypotensive response in sepsis and provide new therapeutic targets for its treatment.
Article
Multidisciplinary Sciences
Min Jiang, Yu Song, Mei-Xia Ren, Run-Chao He, Xian-Hui Dong, Xue-Heng Li, Zhi-Feng Lu, Shu Li, Jia Wu, Yan-Rou Bei, Fei Liu, Yan Long, Shao-Guo Wu, Xue-Hui Liu, Li-Mei Wu, Hong-Ling Yang, David G. Mcvey, Xiao-Yan Dai, Shu Ye, Yan-Wei Hu
Summary: This study uncovers a novel role of lncRNA NIPA1-SO in atherosclerosis, demonstrating its inhibitory effects on vascular inflammation and intracellular cholesterol accumulation by binding to FUBP1 and suppressing NIPA1 expression.
JOURNAL OF ADVANCED RESEARCH
(2023)
Article
Medicine, Research & Experimental
Yequn Chen, Rongbing Chen, Xin Wang, Yan Zhou, Liekai Hong, Nianling Xiong, Jinxiu Zhu, Shu Ye, Xuerui Tan
Summary: This study aims to evaluate the effect of probiotics on in-hospital mortality and the incidence of major adverse cardiovascular events in patients with acute myocardial infarction (AMI) through a randomized controlled trial. The study involves 2594 adult patients diagnosed with AMI, who will be randomly assigned to receive either probiotics or standard treatment strategy. The purpose of this study is to determine whether probiotics can reduce in-hospital mortality and improve prognosis in patients with AMI.
Article
Cell Biology
Wei Yang, Junjun Cao, David G. McVey, Shu Ye
Summary: Genome-wide association studies have identified a link between the genetic variant rs17514846 in the FURIN gene and coronary artery disease. Our study demonstrates that rs17514846 modulates FURIN expression through DNA methylation inhibition, which is mediated by the MeCP2 protein. Knockdown of MeCP2 increases FURIN expression, affecting monocyte migration and proliferation.
Article
Medicine, Research & Experimental
Chia Yee Tan, Pui Shi Chan, Hansen Tan, Sung Wei Tan, Chang Jie Mick Lee, Jiong-Wei Wang, Shu Ye, Hendrikje Werner, Ying Jie Loh, Yin Loon Lee, Matthew Ackers-Johnson, Roger S. Y. Foo, Jianming Jiang
Summary: In this study, the authors evaluated 14 potential candidates, including Lmna gene products, key signaling pathways, calcium handling, proliferation regulators, and modifiers of LINC complex function, in a specific Lmna DCM model. They found that several candidates, including Smad3, Yy1, Bmp7, Ctgf, aYAP1, Sun1, Lamin A, and Lamin C, restored cardiac function and reduced markers of heart failure and fibrosis in Lmna DCM. Knockdown of Sun1 or supplementation of Lamin C also led to prolonged survival. However, supplementation of Lamin A did not improve long term survival and could even induce DCM in healthy hearts. These findings suggest that Lamin C and Sun1 may be potential therapeutic targets for LMNA DCM.
JOURNAL OF TRANSLATIONAL MEDICINE
(2023)
Letter
Cardiac & Cardiovascular Systems
Charles U. Solomon, Wei Yang, Shu Ye
JOURNAL OF THE AMERICAN HEART ASSOCIATION
(2023)
Review
Cardiac & Cardiovascular Systems
Runji Chen, David G. McVey, Daifei Shen, Xiaoxin Huang, Shu Ye
Summary: This article discusses the different VSMC phenotypes in atherosclerotic lesions and introduces various methods for studying VSMC phenotypic switching.
JOURNAL OF THE AMERICAN HEART ASSOCIATION
(2023)
Meeting Abstract
Cardiac & Cardiovascular Systems
A. Yousuf, D. Mcvey, S. Ye