Eukaryotic and prokaryotic promoter prediction using hybrid approach

Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition

(2009) Vetriselvi Rangannan et al.   Molecular BioSystems

RBF-TSS: Identification of Transcription Start Site in Human Using Radial Basis Functions Network and Oligonucleotide Positional Frequencies

(2009) Rami N. Mahdi et al.   PLoS One

Use of  tetrapeptide signals for protein secondary-structure prediction

(2008) Yonge Feng et al.   AMINO ACIDS

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements

(2008) Rahul Satija et al.   BIOINFORMATICS

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles

(2008) T. Abeel et al.   BIOINFORMATICS

Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach

(2008) Firoz Anwar et al.   BMC BIOINFORMATICS

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution

(2008) Rekin's Janky et al.   BMC BIOINFORMATICS

Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides

(2008) Jian-Yi Yang et al.   BMC BIOINFORMATICS

Phylogenetic comparison of the known Chlamydia trachomatis σ66 promoters across to Chlamydia pneumoniae and Chlamydia caviae identifies seven poorly conserved promoters

(2008) Brian Grech et al.   RESEARCH IN MICROBIOLOGY

DNA sequence and structural properties as predictors of human and mouse promoters

(2007) Pelin Akan et al.   GENE

Generic eukaryotic core promoter prediction using structural features of DNA

(2007) T. Abeel et al.   GENOME RESEARCH