4.2 Article

Counterpoise corrected interaction energies are not systematically better than uncorrected ones: comparison with CCSD(T) CBS extrapolated values

期刊

THEORETICAL CHEMISTRY ACCOUNTS
卷 126, 期 1-2, 页码 75-85

出版社

SPRINGER
DOI: 10.1007/s00214-009-0676-z

关键词

Basis set superposition error (BSSE); Counterpoise correction; Weak interactions; Reaction barriers

资金

  1. DGAPA UNAM [PAPIIT-IN203808]

向作者/读者索取更多资源

The effect of the inclusion of counterpoise corrections (CP) on the accuracy of interaction energies has been studied for different systems accounting for (1) intermolecular interactions, (2) intramolecular interactions and (3) chemical reactions. To minimize the error associated with the method of choice, the energy calculations were performed using CCSD(T) in all the cases. The values obtained using aug-cc-pVXZ basis sets are compared to CBS-extrapolated values. It has been concluded that at least for the tested systems CP corrections systematically leads to results that differ from the CBS-extrapolated ones to a larger extension than the uncorrected ones. Accordingly, from a practical point of view, we do not recommend the inclusion of such corrections in the calculation of interaction energies, except for CBS extrapolations. The best way of dealing with basis set superposition error (BSSE) is not to use CP corrections, but to make a computational effort for increasing the basis set. This approach does not eliminate BSSE but significantly decreases it, and more importantly it proportionally decreases all the errors arising from the basis set truncation.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.2
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Biochemistry & Molecular Biology

Potentiating the Benefits of Melatonin through Chemical Functionalization: Possible Impact on Multifactorial Neurodegenerative Disorders

Annia Galano, Eduardo G. Guzman-Lopez, Russel J. Reiter

Summary: Melatonin and its derivatives have potential in antioxidant protection and neuroprotection, and chemistry research may lead to the discovery of new compounds. Research is also focused on the discovery of multifunctional pharmaceuticals for use in various diseases including neurodegenerative disorders.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Chemistry, Multidisciplinary

Chemical repair of damaged leucine and tryptophane by thiophenols at close to diffusion-controlled rates: Mechanisms and kinetics

Mirzam Carreon-Gonzalez, Leonardo Munoz-Rugeles, Annik Vivier-Bunge, Juan Raul Alvarez-Idaboy

Summary: This study investigated the repairing antioxidant activity of eight different thiophenols for damaged leucine and tryptophane, and elucidated the corresponding reaction mechanisms. Thiophenols repair leucine in a similar manner to the one used by glutathione to repair carbon-centered radicals, and restore tryptophane via proton-coupled electron transfer and single electron transfer mechanisms.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2022)

Article Biochemistry & Molecular Biology

Antioxidants into Nopal (Opuntia ficus-indica), Important Inhibitors of Free Radicals' Formation

Romina Castaneda-Arriaga, Adriana Perez-Gonzalez, Tiziana Marino, Nino Russo, Annia Galano

Summary: Phenolic acids in nopal can prevent the formation of hydroxyl free radicals by chelating copper ions, thereby reducing the harmful effects caused by oxidative stress.

ANTIOXIDANTS (2021)

Article Biochemistry & Molecular Biology

CADMA-Chem: A Computational Protocol Based on Chemical Properties Aimed to Design Multifunctional Antioxidants

Eduardo Gabriel Guzman-Lopez, Miguel Reina, Adriana Perez-Gonzalez, Misaela Francisco-Marquez, Luis Felipe Hernandez-Ayala, Romina Castaneda-Arriaga, Annia Galano

Summary: This article presents a computational protocol for designing new antioxidants with versatile behavior. The protocol, called CADMA-Chem, allows for the analysis of drug-like behavior, toxicity, manufacturability, versatile antioxidant protection, and receptor-ligand binding affinities. It is expected to accelerate the discovery of oral drugs that can prevent or slow down multifactorial human health disorders.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)

Article Chemistry, Physical

Computational design of rasagiline derivatives: Searching for enhanced antioxidant capability

Miguel Reina, Eduardo Gabriel Guzman-Lopez, Annia Galano

Summary: This study presents a set of new rasagiline derivatives that are designed to be antioxidant compounds for treating neurodegenerative disorders. Computational methods were used to produce and evaluate these derivatives, identifying three of them as the most promising with potential for better free radical scavenging and neuroprotective capabilities compared to rasagiline.

INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY (2023)

Article Chemistry, Physical

Newly designed melatonin analogues with potential neuroprotective effects

Cesar Millan-Pacheco, Iris N. Serratos, Sinai del Rosario Sanchez Gonzalez, Annia Galano

Summary: This study explored the molecular recognition between human COMT and two newly designed melatonin analogues, suggesting that these analogues may act as COMT inhibitors. The analysis of binding energies revealed that the binding energy between COMT and dm-115 is similar to that of L-dopa and slightly higher than that of dopamine.

THEORETICAL CHEMISTRY ACCOUNTS (2022)

Review Chemistry, Multidisciplinary

Chalcone Derivatives with a High Potential as Multifunctional Antioxidant Neuroprotectors

Adriana Perez-Gonzalez, Romina Castaneda-Arriaga, Eduardo Gabriel Guzman-Lopez, Luis Felipe Hernandez-Ayala, Annia Galano

Summary: This study systematically and rationally searched for chalcone derivatives with multifunctional behavior, using a computer-assisted protocol (CADMA-Chem). By selecting a subset of molecules with the best drug-like behavior, four chalcone derivatives were identified as promising candidates for multifunctional antioxidants with neuroprotective effects.

ACS OMEGA (2022)

Article Chemistry, Physical

Limonene: A scented and versatile tropospheric free radical deactivator

Misaela Francisco-Marquez, Annia Galano

Summary: In this study, the reactions between limonene and various free radicals were investigated using density functional theory. It was found that the relative reactivity of the studied radicals towards limonene follows the order: (SH)-S-center dot > (OBr)-O-center dot > (OCH3)-O-center dot > (OOH)-O-center dot > (OOCH3)-O-center dot.

INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY (2023)

Article Biochemistry & Molecular Biology

The Synergy between Glutathione and Phenols-Phenolic Antioxidants Repair Glutathione: Closing the Virtuous Circle-A Theoretical Insight

Mirzam Carreon-Gonzalez, Juan Raul Alvarez-Idaboy

Summary: This study investigated the synergy between glutathione (GSH) and phenolic antioxidants using Quantum Chemistry and computational kinetics. The results showed that phenolic antioxidants can repair GSH through sequential proton loss electron transfer (SPLET) and proton-coupled electron transfer (PCET), enhancing antioxidant activity.

ANTIOXIDANTS (2023)

Article Biochemistry & Molecular Biology

Rational Design of Multifunctional Ferulic Acid Derivatives Aimed for Alzheimer's and Parkinson's Diseases

Eduardo Gabriel Guzman-Lopez, Miguel Reina, Luis Felipe Hernandez-Ayala, Annia Galano

Summary: Ferulic acid has beneficial effects on human health and 185 new derivatives were computationally designed using CADMA-Chem protocol. The chemical space of these derivatives was evaluated using selection and elimination scores based on ADME properties, toxicity, and synthetic accessibility. Twelve derivatives were further investigated and their potential as antioxidants and neuroprotectors was predicted and analyzed.

ANTIOXIDANTS (2023)

Article Plant Sciences

Calmodulin-Targeting Molecules from Ageratina grandifolia

Jose A. Gutierrez-Gonzalez, Araceli Perez-Vasquez, Martin Gonzalez-Andrade, Annia Galano, Jose L. Villasenor, Rachel Mata

Summary: Four new natural chemical entities were isolated from Ageratina grandifolia, along with 11 known compounds. The structures of these compounds were determined using various techniques. Compounds 8, 10, 11, and 12 showed high affinity for calmodulin and displayed potential therapeutic and research applications.

JOURNAL OF NATURAL PRODUCTS (2023)

Article Biochemistry & Molecular Biology

Quinoline Derivatives: Promising Antioxidants with Neuroprotective Potential

Luis Felipe Hernandez-Ayala, Eduardo Gabriel Guzman-Lopez, Annia Galano

Summary: Quinoline and its derivatives have been shown to have diverse biological activities. In this study, 8536 quinoline derivatives were designed and screened using the CADMA-Chem protocol. The selected derivatives were further investigated for their acid-base, antioxidant and neuroprotective properties. The results indicate that some derivatives exhibit promising antioxidant and neuroprotective activities, making them potential candidates for the treatment of Alzheimer's and Parkinson's diseases.

ANTIOXIDANTS (2023)

Article Chemistry, Multidisciplinary

Free radical scavenging activity of newly designed sesamol derivatives

Laura M. Castro-Gonzalez, Annia Galano, Juan Raul Alvarez-Idaboy

Summary: This study focuses on the free radical scavenging activity of sesamol derivatives, showing their potential as antioxidants, with single electron transfer and formal hydrogen atom transfer identified as the main reaction mechanisms.

NEW JOURNAL OF CHEMISTRY (2021)

Article Chemistry, Multidisciplinary

Computationally designed p-coumaric acid analogs: searching for neuroprotective antioxidants

Miguel Reina, Eduardo Gabriel Guzman-Lopez, Isabella Romeo, Tiziana Marino, Nino Russo, Annia Galano

Summary: A systematic search for new p-coumaric acid derivatives was conducted using a computer-assisted protocol, resulting in the selection of 10 derivatives with favorable drug-like behavior and lower toxicity. Three of these derivatives were identified as promising chemical antioxidants, potentially more effective than p-coumaric acid itself in combating oxidative stress. These findings suggest potential applications in developing new non-nitrocatechol inhibitors for Parkinson's disease treatment without the side effects of current inhibitors.

NEW JOURNAL OF CHEMISTRY (2021)

暂无数据