A Species Tree for the Australo-Papuan Fairy-wrens and Allies (Aves: Maluridae)

A multigene phylogeny examining evolutionary and ecological relationships in the Australo-papuan wrens of the subfamily Malurinae (Aves)

(2011) Amy C. Driskell et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phybase: an R package for species tree analysis

(2010) L. Liu et al.   BIOINFORMATICS

Evolution of the Australasian songbird fauna

(2010) Les Christidis et al.   EMU

Rodent Evolution: Back to the Root

(2010) Gennady Churakov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plumage patterns are good indicators of taxonomic diversity, but not of phylogenetic affinities, in Australian grasswrens Amytornis (Aves: Maluridae)

(2010) Les Christidis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny and evolution of the Meliphagoidea, the largest radiation of Australasian songbirds

(2010) Janet L. Gardner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconstructing the phylogeny of “Buarremon” brush-finches and near relatives (Aves, Emberizidae) from individual gene trees

(2010) Alexander Flórez-Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

(2010) Huateng Huang et al.   SYSTEMATIC BIOLOGY

The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods

(2010) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Systematic and conservation implications of mitochondrial DNA diversity in emu-wrens, Stipiturus (Aves: Maluridae)

(2009) S. C. Donnellan et al.   EMU

Phylogeography: its development and impact in Australo-Papuan ornithology with special reference to paraphyly in Australian birds

(2009) Leo Joseph et al.   EMU

A tangled tale of two teal: population history of the greyAnas gracilisand chestnut tealA. castaneaof Australia

(2009) Leo Joseph et al.   JOURNAL OF AVIAN BIOLOGY

Large-Scale Parsimony Analysis of Metazoan Indels in Protein-Coding Genes

(2009) F. Belinky et al.   MOLECULAR BIOLOGY AND EVOLUTION

Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)

(2009) Adam D. Leaché   SYSTEMATIC BIOLOGY

Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design

(2009) John E. McCormack et al.   SYSTEMATIC BIOLOGY

Phylogenetic Analysis in the Anomaly Zone

(2009) Liang Liu et al.   SYSTEMATIC BIOLOGY

Estimating Species Phylogenies Using Coalescence Times among Sequences

(2009) Liang Liu et al.   SYSTEMATIC BIOLOGY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Species Tree Inference by Minimizing Deep Coalescences

(2009) Cuong Than et al.   PLoS Computational Biology

Plumage color and reproduction in the red-backed fairy-wren: Why be a dull breeder?

(2008) M. S. Webster et al.   BEHAVIORAL ECOLOGY

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

(2008) Cuong Than et al.   BMC BIOINFORMATICS

Reproductive anatomy of male Southern Emu-wrens (Stipiturus malachurus) and Striated Grasswrens (Amytornis striatus)

(2008) Melissah Rowe et al.   EMU

DIVERGENCE ACROSS AUSTRALIA'S CARPENTARIAN BARRIER: STATISTICAL PHYLOGEOGRAPHY OF THE RED-BACKED FAIRY WREN (MALURUS MELANOCEPHALUS)

(2008) June Y. Lee et al.   EVOLUTION

ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA

(2008) Liang Liu et al.   EVOLUTION

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes

(2008) Jena L. Chojnowski et al.   GENE

Multilocus phylogeography and phylogenetics using sequence-based markers

(2008) Patrícia H. Brito et al.   GENETICA

Good vibrations? Structure and function of the cloacal tip of male Australian Maluridae

(2008) Melissah Rowe et al.   JOURNAL OF AVIAN BIOLOGY

Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data

(2008) T.-K. Seo   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

(2008) A ECKERT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles

(2008) Ted M. Townsend et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles

(2008) Robert C. Thomson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Phylogenomic Study of Birds Reveals Their Evolutionary History

(2008) S. J. Hackett et al.   SCIENCE

Evidence for a New Root of the Tree of Life

(2008) James A. Lake et al.   SYSTEMATIC BIOLOGY

Comparison of Methods for Species-Tree Inference in the Sawfly Genus Neodiprion (Hymenoptera: Diprionidae)

(2008) Catherine R. Linnen et al.   SYSTEMATIC BIOLOGY

Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data

(2008) Robb T. Brumfield et al.   SYSTEMATIC BIOLOGY

Multilocus Phylogenetics of a Rapid Radiation in the Genus Thomomys (Rodentia: Geomyidae)

(2008) Natalia M. Belfiore et al.   SYSTEMATIC BIOLOGY

Testing Congruence in Phylogenomic Analysis

(2008) Jessica W. Leigh et al.   SYSTEMATIC BIOLOGY