A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
出版年份 2015 全文链接
标题
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
作者
关键词
Feature Selection, Chronic Lymphocytic Leukemia, Influenza Vaccination, Clonal Expansion, Immunological Status
出版物
Genome Medicine
Volume 7, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-05-27
DOI
10.1186/s13073-015-0169-8
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- How a well-adapted immune system is organized
- (2015) Andreas Mayer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assessment of immune status using blood transcriptomics and potential implications for global health
- (2015) Damien Chaussabel SEMINARS IN IMMUNOLOGY
- Influenza vaccine response profiles are affected by vaccine preparation and preexisting immunity, but not HIV infection
- (2015) Christoph T Berger et al. Human Vaccines & Immunotherapeutics
- Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice
- (2014) Victor Greiff et al. BMC IMMUNOLOGY
- Human Responses to Influenza Vaccination Show Seroconversion Signatures and Convergent Antibody Rearrangements
- (2014) Katherine J.L. Jackson et al. Cell Host & Microbe
- T cell repertoire following autologous stem cell transplantation for multiple sclerosis
- (2014) Paolo A. Muraro et al. JOURNAL OF CLINICAL INVESTIGATION
- Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling
- (2014) O. V. Britanova et al. JOURNAL OF IMMUNOLOGY
- Identification of Antigen-Specific B Cell Receptor Sequences Using Public Repertoire Analysis
- (2014) Johannes Trück et al. JOURNAL OF IMMUNOLOGY
- The promise and challenge of high-throughput sequencing of the antibody repertoire
- (2014) George Georgiou et al. NATURE BIOTECHNOLOGY
- Detecting and correcting systematic variation in large-scale RNA sequencing data
- (2014) Sheng Li et al. NATURE BIOTECHNOLOGY
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
- (2014) NATURE BIOTECHNOLOGY
- Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells
- (2014) Evan W Newell et al. NATURE BIOTECHNOLOGY
- Towards error-free profiling of immune repertoires
- (2014) Mikhail Shugay et al. NATURE METHODS
- Sequencing the functional antibody repertoire—diagnostic and therapeutic discovery
- (2014) William H. Robinson Nature Reviews Rheumatology
- Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence
- (2014) Claire T. Deakin et al. NUCLEIC ACIDS RESEARCH
- Zipf’s Law and Criticality in Multivariate Data without Fine-Tuning
- (2014) David J. Schwab et al. PHYSICAL REVIEW LETTERS
- Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing
- (2014) Ulrike Menzel et al. PLoS One
- Systematic Characterization and Comparative Analysis of the Rabbit Immunoglobulin Repertoire
- (2014) Jason J. Lavinder et al. PLoS One
- Quantifying selection in immune receptor repertoires
- (2014) Yuval Elhanati et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversity and clonal selection in the human T-cell repertoire
- (2014) Q. Qi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Studying the antibody repertoire after vaccination: practical applications
- (2014) Jacob D. Galson et al. TRENDS IN IMMUNOLOGY
- Quantification of HTLV-1 Clonality and TCR Diversity
- (2014) Daniel J. Laydon et al. PLoS Computational Biology
- A Balanced Look at the Implications of Genomic (and Other “Omics”) Testing for Disease Diagnosis and Clinical Care
- (2014) Scott Boyd et al. Genes
- TCR Repertoire Analysis by Next Generation Sequencing Allows Complex Differential Diagnosis of T Cell-Related Pathology
- (2013) M. Dziubianau et al. AMERICAN JOURNAL OF TRANSPLANTATION
- Convergent Antibody Signatures in Human Dengue
- (2013) Poornima Parameswaran et al. Cell Host & Microbe
- Immunosequencing: applications of immune repertoire deep sequencing
- (2013) Harlan Robins CURRENT OPINION IN IMMUNOLOGY
- Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes
- (2013) Christian E. Busse et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Profiling the IgOme: Meeting the challenge
- (2013) Yael Weiss-Ottolenghi et al. FEBS LETTERS
- Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations
- (2013) Rachael J.M. Bashford-Rogers et al. GENOME RESEARCH
- A Novel Approach to Tracking Antigen-Experienced CD4 T Cells into Functional Compartments via Tandem Deep and Shallow TCR Clonotyping
- (2013) M. Estorninho et al. JOURNAL OF IMMUNOLOGY
- Effects of Aging, Cytomegalovirus Infection, and EBV Infection on Human B Cell Repertoires
- (2013) C. Wang et al. JOURNAL OF IMMUNOLOGY
- High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire
- (2013) Brandon J DeKosky et al. NATURE BIOTECHNOLOGY
- Chimeric Antigen Receptor–Modified T Cells for Acute Lymphoid Leukemia
- (2013) Stephan A. Grupp et al. NEW ENGLAND JOURNAL OF MEDICINE
- Genetic measurement of memory B-cell recall using antibody repertoire sequencing
- (2013) C. Vollmers et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PANDAseq: paired-end assembler for illumina sequences
- (2012) Andre P Masella et al. BMC BIOINFORMATICS
- A minimal model of peptide binding predicts ensemble properties of serum antibodies
- (2012) Victor Greiff et al. BMC GENOMICS
- Wrestling with the repertoire: The promise and perils of next generation sequencing for antigen receptors
- (2012) Paul D. Baum et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Next generation sequencing for TCR repertoire profiling: Platform-specific features and correction algorithms
- (2012) Dmitry A. Bolotin et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Models and methods for analysis of lymphocyte repertoire generation, development, selection and evolution
- (2012) Ramit Mehr et al. IMMUNOLOGY LETTERS
- Methods for diversity and overlap analysis in T-cell receptor populations
- (2012) Grzegorz A. Rempala et al. JOURNAL OF MATHEMATICAL BIOLOGY
- Measuring diversity: the importance of species similarity
- (2011) Tom Leinster et al. ECOLOGY
- Rep-Seq: uncovering the immunological repertoire through next-generation sequencing
- (2011) Jennifer Benichou et al. IMMUNOLOGY
- Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID
- (2011) C. B. Jabara et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A flexible R package for nonnegative matrix factorization
- (2010) Renaud Gaujoux et al. BMC BIOINFORMATICS
- Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells
- (2010) Sai T Reddy et al. NATURE BIOTECHNOLOGY
- Maximum entropy models for antibody diversity
- (2010) T. Mora et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Overlap and Effective Size of the Human CD8+ T Cell Receptor Repertoire
- (2010) H. S. Robins et al. Science Translational Medicine
- ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
- (2009) M. Morgan et al. BIOINFORMATICS
- Estimation of T-cell repertoire diversity and clonal size distribution by Poisson abundance models
- (2009) Nuno Sepúlveda et al. JOURNAL OF IMMUNOLOGICAL METHODS
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