BEMOVI, software for extracting behavior and morphology from videos, illustrated with analyses of microbes

idTracker: tracking individuals in a group by automatic identification of unmarked animals

(2014) Alfonso Pérez-Escudero et al.   NATURE METHODS

Automated image-based tracking and its application in ecology

(2014) Anthony I. Dell et al.   TRENDS IN ECOLOGY & EVOLUTION

Big answers from small worlds: a user's guide for protist microcosms as a model system in ecology and evolution

(2014) Florian Altermatt et al.   Methods in Ecology and Evolution

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

(2013) François Mallard et al.   PLoS One

Emerging predictable features of replicated biological invasion fronts

(2013) A. Giometto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaling body size fluctuations

(2013) A. Giometto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mighty small: Observing and modeling individual microbes becomes big science

(2013) J.-U. Kreft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Implementing image analysis in laboratory-based experimental systems for ecology and evolution: a hands-on guide

(2013) Frank Pennekamp et al.   Methods in Ecology and Evolution

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Co-Localized or Randomly Distributed? Pair Cross Correlation of In Vivo Grown Subgingival Biofilm Bacteria Quantified by Digital Image Analysis

(2012) Claudia Schillinger et al.   PLoS One

Dendritic connectivity controls biodiversity patterns in experimental metacommunities

(2012) F. Carrara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Metadata matters: access to image data in the real world

(2010) Melissa Linkert et al.   JOURNAL OF CELL BIOLOGY

Digital zooplankton image analysis using the ZooScan integrated system

(2010) G. Gorsky et al.   JOURNAL OF PLANKTON RESEARCH

High-throughput ethomics in large groups of Drosophila

(2009) Kristin Branson et al.   NATURE METHODS

Stalked protozoa identification by image analysis and multivariable statistical techniques

(2008) A. L. Amaral et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Assessment of ZooImage as a tool for the classification of zooplankton

(2008) Jenefer L. Bell et al.   JOURNAL OF PLANKTON RESEARCH