标题
Molecular ecological tools to decipher the role of our microbial mass in obesity
作者
关键词
-
出版物
Beneficial Microbes
Volume 6, Issue 1, Pages 61-81
出版商
Wageningen Academic Publishers
发表日期
2014-06-06
DOI
10.3920/bm2014.0016
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Impact of Diet on Human Intestinal Microbiota and Health
- (2014) Anne Salonen et al. Annual Review of Food Science and Technology
- Experimental models of the gut microbiome
- (2013) Koen Venema et al. BEST PRACTICE & RESEARCH IN CLINICAL GASTROENTEROLOGY
- A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets
- (2013) Milkha M Leimena et al. BMC GENOMICS
- Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems
- (2013) Carolin A. Kolmeder et al. Journal of Proteomics
- Richness of human gut microbiome correlates with metabolic markers
- (2013) Emmanuelle Le Chatelier et al. NATURE
- Dietary intervention impact on gut microbial gene richness
- (2013) Aurélie Cotillard et al. NATURE
- Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
- (2013) Morgan G I Langille et al. NATURE BIOTECHNOLOGY
- Duodenal Infusion of Donor Feces for Recurrent Clostridium difficile
- (2013) Els van Nood et al. NEW ENGLAND JOURNAL OF MEDICINE
- Human intestinal microbiota composition is associated with local and systemic inflammation in obesity
- (2013) Froukje J. Verdam et al. Obesity
- The Long-Term Stability of the Human Gut Microbiota
- (2013) J. J. Faith et al. SCIENCE
- High taxonomic level fingerprint of the human intestinal microbiota by Ligase Detection Reaction - Universal Array approach
- (2012) Marco Candela et al. BMC MICROBIOLOGY
- Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure
- (2012) Manuel Ferrer et al. ENVIRONMENTAL MICROBIOLOGY
- Transfer of Intestinal Microbiota From Lean Donors Increases Insulin Sensitivity in Individuals With Metabolic Syndrome
- (2012) Anne Vrieze et al. GASTROENTEROLOGY
- Intestinal microbiota in functional bowel disorders: a Rome foundation report
- (2012) Magnus Simrén et al. GUT
- Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
- (2012) David A W Soergel et al. ISME Journal
- The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
- (2012) Erwin G Zoetendal et al. ISME Journal
- Microbiota conservation and BMI signatures in adult monozygotic twins
- (2012) Sebastian Tims et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- A framework for human microbiome research
- (2012) NATURE
- Gut microbiota composition correlates with diet and health in the elderly
- (2012) Marcus J. Claesson et al. NATURE
- A metagenome-wide association study of gut microbiota in type 2 diabetes
- (2012) Junjie Qin et al. NATURE
- Women With and Without Metabolic Disorder Differ in Their Gut Microbiota Composition
- (2012) Eveliina Munukka et al. Obesity
- Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions
- (2012) Carolin A. Kolmeder et al. PLoS One
- Analysis of the Gut Microbiota in the Old Order Amish and Its Relation to the Metabolic Syndrome
- (2012) Margaret L. Zupancic et al. PLoS One
- Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
- (2011) Reiner Jumpertz et al. AMERICAN JOURNAL OF CLINICAL NUTRITION
- Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples
- (2011) Bartholomeus van den Bogert et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads
- (2011) Andrea K. Bartram et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
- (2011) William A. Walters et al. BIOINFORMATICS
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
- An iterative workflow for mining the human intestinal metaproteome
- (2011) Koos Rooijers et al. BMC GENOMICS
- A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
- (2011) Y. Sun et al. BRIEFINGS IN BIOINFORMATICS
- Application of phylogenetic microarrays to interrogation of human microbiota
- (2011) Oleg Paliy et al. FEMS MICROBIOLOGY ECOLOGY
- Bile Acid Is a Host Factor That Regulates the Composition of the Cecal Microbiota in Rats
- (2011) K.B.M. Saiful Islam et al. GASTROENTEROLOGY
- Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys
- (2011) Jeffrey J Werner et al. ISME Journal
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
- (2011) Daniel McDonald et al. ISME Journal
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Experimental and analytical tools for studying the human microbiome
- (2011) Justin Kuczynski et al. NATURE REVIEWS GENETICS
- Responses of Gut Microbiota to Diet Composition and Weight Loss in Lean and Obese Mice
- (2011) Yann Ravussin et al. Obesity
- Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota
- (2011) María José Gosalbes et al. PLoS One
- Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
- (2011) Patrick D. Schloss et al. PLoS One
- Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
- (2011) S. Greenblum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice
- (2011) J. J. Faith et al. SCIENCE
- Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
- (2011) G. D. Wu et al. SCIENCE
- The under-recognized dominance of Verrucomicrobia in soil bacterial communities
- (2011) Gaddy T. Bergmann et al. SOIL BIOLOGY & BIOCHEMISTRY
- Effects of the gut microbiota on obesity and glucose homeostasis
- (2011) Thomas Greiner et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Moving pictures of the human microbiome
- (2011) J Gregory Caporaso et al. GENOME BIOLOGY
- Metatranscriptome Analysis of the Human Fecal Microbiota Reveals Subject-Specific Expression Profiles, with Genes Encoding Proteins Involved in Carbohydrate Metabolism Being Dominantly Expressed
- (2010) C. C. G. M. Booijink et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Analyses: Past and Future Trends
- (2010) Carola Simon et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
- (2010) Gary D Wu et al. BMC MICROBIOLOGY
- Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women
- (2010) A. Santacruz et al. BRITISH JOURNAL OF NUTRITION
- The distinction of metabolically ‘healthy’ from ‘unhealthy’ obese individuals
- (2010) Matthias Blüher CURRENT OPINION IN LIPIDOLOGY
- Differential Adaptation of Human Gut Microbiota to Bariatric Surgery-Induced Weight Loss: Links With Metabolic and Low-Grade Inflammation Markers
- (2010) J.-P. Furet et al. DIABETES
- Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
- (2010) L. Tasse et al. GENOME RESEARCH
- Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models
- (2010) E F Murphy et al. GUT
- BIPES, a cost-effective high-throughput method for assessing microbial diversity
- (2010) Hong-Wei Zhou et al. ISME Journal
- Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
- (2010) Anne Salonen et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes
- (2010) Minseok Kim et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives
- (2010) A. Salonen et al. MICROBIOLOGY-SGM
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
- (2010) Jens Reeder et al. NATURE METHODS
- Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
- (2010) Marcus J. Claesson et al. NUCLEIC ACIDS RESEARCH
- Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults
- (2010) Nadja Larsen et al. PLoS One
- Composition, variability, and temporal stability of the intestinal microbiota of the elderly
- (2010) M. J. Claesson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
- (2010) P. J. Turnbaugh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Catalog of Reference Genomes from the Human Microbiome
- (2010) et al. SCIENCE
- High-Throughput Quantitative Analysis of the Human Intestinal Microbiota with a Phylogenetic Microarray
- (2009) O. Paliy et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Obesity and the human microbiome
- (2009) Ruth E Ley CURRENT OPINION IN GASTROENTEROLOGY
- Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
- (2009) Mirjana Rajilić-Stojanović et al. ENVIRONMENTAL MICROBIOLOGY
- Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
- (2009) Victor Kunin et al. ENVIRONMENTAL MICROBIOLOGY
- High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity
- (2009) Marie A. Hildebrandt et al. GASTROENTEROLOGY
- The 'rare biosphere': a reality check
- (2009) Jens Reeder et al. NATURE METHODS
- Microbiota and SCFA in Lean and Overweight Healthy Subjects
- (2009) Andreas Schwiertz et al. Obesity
- Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine
- (2009) Marcus J. Claesson et al. PLoS One
- Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
- (2009) M. A. Mahowald et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Human gut microbiota in obesity and after gastric bypass
- (2009) H. Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Environmental proteomics: Analysis of structure and function of microbial communities
- (2009) Thomas Schneider et al. PROTEOMICS
- The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
- (2009) P. J. Turnbaugh et al. Science Translational Medicine
- An Invitation to the Marriage of Metagenomics and Metabolomics
- (2008) Peter J. Turnbaugh et al. CELL
- Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome
- (2008) Peter J. Turnbaugh et al. Cell Host & Microbe
- High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
- (2008) E G Zoetendal et al. GUT
- Human colonic microbiota associated with diet, obesity and weight loss
- (2008) S H Duncan et al. INTERNATIONAL JOURNAL OF OBESITY
- Accuracy of body mass index in diagnosing obesity in the adult general population
- (2008) A Romero-Corral et al. INTERNATIONAL JOURNAL OF OBESITY
- Shotgun metaproteomics of the human distal gut microbiota
- (2008) Nathan C Verberkmoes et al. ISME Journal
- Systems biology: Metabonomics
- (2008) Jeremy K. Nicholson et al. NATURE
- A core gut microbiome in obese and lean twins
- (2008) Peter J. Turnbaugh et al. NATURE
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- (2008) Micah Hamady et al. NATURE METHODS
- Molecular eco-systems biology: towards an understanding of community function
- (2008) Jeroen Raes et al. NATURE REVIEWS MICROBIOLOGY
- Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
- (2008) Harry J. Flint et al. NATURE REVIEWS MICROBIOLOGY
- Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
- (2008) Anders F. Andersson et al. PLoS One
- The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
- (2008) Les Dethlefsen et al. PLOS BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started