Article
Soil Science
Dongqi Jiang, Nan Jiang, Hui Jiang, Lijun Chen
Summary: An incubation experiment was conducted to investigate the impacts of urease inhibitors on soil urease activities and microbial gene abundances. The results showed that urease inhibitors decreased extracellular urease activity while increasing intracellular urease activity of soil. They also significantly increased bacterial and fungal gene abundances but had no significant effect on archaea gene abundance. Bacterial gene abundances were closely related to intracellular urease, suggesting that bacteria played a more important role in this process than fungi and archaea.
Article
Agriculture, Multidisciplinary
Yeon-Soo Kim, Sang-Dae Lee, Seung-Min Baek, Seung-Yun Baek, Hyeon-Ho Jeon, Jun-Ho Lee, Md. Abu Ayub Siddique, Yong-Joo Kim, Wan-Soo Kim, Taeyong Sim, Simin Yi, Young-Soo Choi
Summary: In this study, a coupled DEM-MBD model was established to predict the draft force of a soil-machine system based on tillage depth. Field tests and calibration were conducted to validate the model, and the results showed high accuracy in predicting draft force compared to the traditional method.
COMPUTERS AND ELECTRONICS IN AGRICULTURE
(2022)
Article
Agriculture, Multidisciplinary
Yeon-Soo Kim, Md Abu Ayub Siddique, Wan-Soo Kim, Yong-Joo Kim, Sang-Dae Lee, Dong-Keun Lee, Seok-Joon Hwang, Ju-Seok Nam, Seong-Un Park, Ryu-Gap Lim
Summary: This study focuses on agricultural soil modeling and prediction of draft force in function of tillage depth using DEM simulation, compared with field test results for accuracy verification. The DEM simulation showed a prediction accuracy within 7.5% compared to measured draft force, outperforming existing theoretical methods. Including soil properties of different soil layers in the DEM soil model can improve prediction accuracy by 20.3% compared to considering only topsoil properties.
COMPUTERS AND ELECTRONICS IN AGRICULTURE
(2021)
Article
Soil Science
Sara Paliaga, Vito Armando Laudicina, Luigi Badalucco
Summary: This study compared the classical chloroform fumigation-incubation (CFI) and fumigation-extraction (CFE) methods with a physical method based on N-2 or CO2 high pressurization (N2HP or CO2HP) for microbial cell lysis in two different soils. The results showed that CO2HP was more efficient than the CFE method for causing microbial cell lysis, and the CO2 pressure value and duration were important factors for increasing extractable organic C. However, CO2HP may have caused the release of non-living organic C.
BIOLOGY AND FERTILITY OF SOILS
(2023)
Article
Environmental Sciences
Ming-Juan Cui, Aloysius Teng, Jian Chu, Bin Cao
Summary: This study presented a quantitative, high-throughput urease activity assay based on a 96-well plate, which can be used for comparing and rapidly screening urease-producing bacteria. The assay revealed bacterial strains with high urease activity and showed the inhibitory effect of calcium on urease activity. The method has potential wide applications in environmental, civil, and medical research.
ENVIRONMENTAL RESEARCH
(2022)
Article
Soil Science
S. A. Schwalb, K. S. Khan, M. Hemkemeyer, S. Heinze, Z. Oskonbaeva, R. G. Joergensen, F. Wichern
Summary: The present study aimed to develop a method for assessing the elemental composition of soil microbial communities. Chloroform fumigation extraction was used to detect the concentrations of secondary and trace elements in soils. It was found that 0.01 M CaCl2 was the best-suited extractant, with a soil-to-extractant ratio of 1:20 and an extraction time of 1 hour. This method successfully extracted elements such as phosphorus, sulphur, potassium, sodium, magnesium, zinc, manganese, copper, nickel, vanadium, boron, silicon, and barium.
EUROPEAN JOURNAL OF SOIL SCIENCE
(2023)
Article
Immunology
Jesus M. Duran Ramirez, Jana Gomez, Chloe L. P. Obernuefemann, Nathaniel C. Gualberto, Jennifer N. Walker
Summary: Catheter-associated urinary tract infections (CAUTIs) are common healthcare-associated infections in the US. This study developed a high throughput semiquantitative assay to rapidly detect and provide more information about urease-producing strains, which may contribute to better prevention or treatment strategies. The assay can easily adapt to different environmental stimuli affecting urease production.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2022)
Article
Entomology
Tae Hyung Kwon, Byungho Lee, Junheon Kim
Summary: This study investigated the effectiveness of ethyl formate as a fumigant against Curculio sikkimensis in chestnuts, and found that it can achieve 100% mortality at the appropriate dose and fumigation time.
Article
Biochemistry & Molecular Biology
Xiaoyin Zhang, Zhanbo Xiong, Ming Li, Nan Zheng, Shengguo Zhao, Jiaqi Wang
Summary: This study successfully identified active urease from rumen microbial communities using an activity- and enrichment-based metaproteomic analysis. This provides a target for designing a novel efficient urease inhibitor to regulate rumen microbial urease activity.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Jing Fang, Yi-Xuan Li, Han-Yan Luo, Wei-Hao Zhang, Kam-Chun Chan, Yui-Man Chan, Hu-Biao Chen, Zhong-Zhen Zhao, Song-Li Li, Cai-Xia Dong, Jun Xu
Summary: Sulfur fumigation affects the chemistry and bioactivity of ginseng polysaccharides, leading to a weakened immunomodulatory function. Sulfur-fumigated ginseng polysaccharides have different chemical properties, such as increased water extraction yield and decreased branching degree, compared to non-fumigated ginseng polysaccharides. Immunocompromised mice showed less improvement in immunophenotypes when treated with sulfur-fumigated ginseng polysaccharides.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2023)
Article
Agronomy
Kang Ni, Andreas Siegfried Pacholski
Summary: Urea granule dissolution in soil and soil urease activity are crucial for accurately predicting nitrogen dynamics after urea application. This study investigated the dissolution of urea granules and the activity of urease in soil under different temperatures. The results showed that soil moisture was the dominant factor at low moisture contents, while temperature controlled the dissolution process at higher moisture levels.
Article
Biochemistry & Molecular Biology
Hyun Jun Woo, Ji Yeong Yang, Pyeongjae Lee, Jong-Bae Kim, Sa-Hyun Kim
Summary: The natural compound zerumbone extracted from Zingiber zerumbet Smith was found to inhibit the urease activity of H. pylori by forming dimers, trimers, or tetramers, suggesting its potential as a therapeutic agent for treating H. pylori infections in humans.
Article
Biochemical Research Methods
Nagarajan Arumugam, Perarasu Thangavelu
Summary: The intracellular L-asparaginase isolated from endophytic fungi Chaetomium sp. exhibited anticancer activity on human blood cancer (MOLT-4) cells after partial purification.
PROTEIN EXPRESSION AND PURIFICATION
(2022)
Article
Multidisciplinary Sciences
Keyvan Pedrood, Homa Azizian, Mohammad Nazari Montazer, Ali Moazzam, Mehdi Asadi, Hamed Montazeri, Mahmood Biglar, Mozhdeh Zamani, Bagher Larijani, Kamiar Zomorodian, Maryam Mohammadi-Khanaposhtani, Cambyz Irajie, Massoud Amanlou, Aida Iraji, Mohammad Mahdavi
Summary: A series of N-thioacylated ciprofloxacin derivatives were synthesized using the Willgerodt-Kindler reaction. The compounds showed potent urease inhibitory activity and antibacterial activity against Gram-positive species. Molecular dynamic simulations revealed the interactions between one compound and the critical residues of the urease active site, resulting in reduced catalytic activity.
SCIENTIFIC REPORTS
(2022)
Article
Chemistry, Multidisciplinary
Vinay Krishnan, Hamed Khodadadi Tirkolaei, Edward Kavazanjian Jr
Summary: We propose an improved method for evaluating the activity of urease using electrical conductivity (EC) measurements. By modeling the chemical equilibrium and utilizing empirical equations, we have developed a function that relates the increase in EC during urea hydrolysis to the concentration of ammonium species present in the reaction solution. This EC-based method is inexpensive and can accurately determine urease activity for various applications.
Article
Environmental Sciences
Msafiri Y. Mkonda, Xinhua He
Summary: This study assessed the influence of soil organic carbon accumulation and climate variability on crop yields in central Tanzania. The results showed that organic fertilization led to greater SOC accumulation and higher crop yields compared to no-fertilization. Additionally, changes in rainfall and temperature were found to be correlated with crop yields.
ENVIRONMENTAL MANAGEMENT
(2023)
Article
Engineering, Environmental
Xiangyu Chen, Jing Yang, Raymond Jianxiong Zeng, Shuping Qin, Xing Liu, Yuzhen Zhang, Shungui Zhou, Man Chen
Summary: Reactive oxygen species (ROS) have been found to play an essential role in promoting N2O emissions in soil/sediment during the anoxic-oxic transition. ROS inhibits the rate of nitrate reduction and increases N2O emissions by inhibiting the step of N2O reduction. Hydrogen peroxide is the dominant ROS species inhibiting N2O reduction, while hydroxyl radicals have negligible effects.
ENVIRONMENTAL SCIENCE & TECHNOLOGY
(2023)
Article
Ecology
Yu-Juan Wang, Xin-Hua He, Lu-Lu Meng, Ying-Ning Zou, Qiang-Sheng Wu
Summary: Soil water stress affects SOC decomposition and C emissions. Glomalin, released by arbuscular mycorrhizal fungi, is an important pool of SOC with hydrophobic characteristics. Inoculation with Rhizophagus intraradices alleviated negative effects on plant growth and leaf water potential under water stress, and increased SOC and mean weight diameter in both root and hyphal chambers.
Article
Microbiology
Zijie Yu, Xinhua He, Zhitong Li, Shuang Zhou, Dalu Guo, Hao Pu, Hongyan Luo
Summary: This study investigated the existence, abundance, and diversity of anaerobic ammonium oxidation (anammox) bacteria in purple paddy soils at different temperatures. By using C-13-DNA stable-isotope probe and Illumina MiSeq high-throughput sequencing, the researchers found differences in the abundance and diversity of anammox bacteria in purple paddy soils at different temperatures. These findings contribute to a better understanding of the regulation of soil nitrogen cycling.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Forestry
Xirong Gu, Hao Jia, Xiaohe Wang, Yanan Jiang, Jie Li, Xinhua He
Summary: Plant tolerance to aluminum toxicity can be enhanced by ectomycorrhizal fungi through biological filtering or physical blockage. This study found that the ectomycorrhizal fungus Lactarius deliciosus was more effective than Pisolithus tinctorius in improving biomass and aluminum tolerance of Pinus massoniana seedlings. The increased aluminum tolerance was attributed to lower absorption capacity, fewer available active sites, decreased affinity and boundary layer thickness for aluminum, and higher aluminum accumulation and translocation in the ECM-inoculated seedlings. These findings contribute to our understanding of the mechanisms and strategies of plant aluminum tolerance conferred by ECM fungi and suggest that inoculation with Lactarius deliciosus is more beneficial for forest plantation and ecosystem restoration in acidic soils, especially in Southwest China and similar soils worldwide.
JOURNAL OF FORESTRY RESEARCH
(2023)
Article
Plant Sciences
Guangcan Yu, Jing Chen, Mengxiao Yu, Andi Li, Ying-Ping Wang, Xinhua He, Xuli Tang, Hui Liu, Jun Jiang, Jiangming Mo, Shuo Zhang, Junhua Yan, Mianhai Zheng
Summary: Nitrogen deposition does not increase plant phosphorus demand in a nitrogen-saturated mature tropical forest. Different nitrogen addition rates regulate soil phosphorus transformation through microbial community transition.
JOURNAL OF ECOLOGY
(2023)
Article
Environmental Sciences
Zijian Qiu, Xinhua He, Haiyang Yu, Chunwu Zhu, Weishou Shen
Summary: The effects of elevated CO2 (eCO2) on paddy soil microbial communities are unclear, especially in different rice cultivars. This study compared the responses of soil bacterial communities to eCO2 and ambient CO2 (aCO2) in two weakly CO2-responsive and two strongly CO2-responsive rice cultivars. The results showed that eCO2 increased differences in bacterial diversity and had positive impacts on soil organic carbon and bacterial abundances. However, eCO2 did not significantly affect the relationship between bacterial diversity and rice yields.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Soil Science
Ping Wu, Minghui Xie, Tim J. Clough, Dan Yuan, Sihuan Wu, Xiaodong He, Chunsheng Hu, Shungui Zhou, Shuping Qin
Summary: Biochar amendment could reduce soil nitrous oxide (N2O) emissions, but the effects and mechanisms of biochar-derived reactive oxygen species (ROS) on N2O emissions remain unclear. In this study, we weakened the persistent free radicals (PFRs) in biochar using trie-thanolamine (TEA) and found that TEA-quenched biochar showed greater potential in mitigating soil N2O emissions compared to un-quenched biochar. The generation of hydrogen peroxide (H2O2) and hydroxyl radical (center dot OH) was positively correlated with N2O emissions. Biochar-derived ROS also inhibited microbial N2O reduction, indicating their role in weakening the mitigation effect of biochar on N2O emissions.
SOIL BIOLOGY & BIOCHEMISTRY
(2023)
Article
Plant Sciences
Lanlan Huang, Yongmei Li, Jing Yuan, Shanping Wan, Carlos Colinas, Xinhua He, Xiaofei Shi, Yanliang Wang, Fuqiang Yu
Summary: In a greenhouse study, the effects of Tuber indicum (Chinese black truffle) and T. lijiangense (Chinese white truffle) colonization on Castanopsis rockii host growth, physiological responses, and mycorrhizosphere bacterial communities were compared. Both truffle species increased leaf photosynthetic rate, leaf P concentration, acid phosphatase activity, and bacterial richness of the mycorrhizosphere. However, T. indicum colonization decreased tartrate content, bacterial acid phosphatase, phoC gene abundance, and peroxidase (POD) activity of ectomycorrhizal root tips, but increased mycorrhizosphere pH and superoxide dismutase (SOD) of ectomycorrhizal root tips compared to T. lijiangense colonization. Mycorrhizosphere bacterial community composition also differed significantly between the two truffle species. The bacterium Agromyces cerinus showed a significant correlation with acid phosphatase activity and leaf P concentration, indicating its potential role in phosphorus mobilization and acquisition.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Environmental Sciences
Xiao Han, Xinhua He, Wei Xiong, Weiyu Shi
Summary: Cities play a central role in carbon emissions and water consumption, and their development is closely connected to carbon-water coupling. However, little is known about the changes in this relationship during urbanization. In the case of Chengdu-Chongqing urban agglomeration in China, carbon-water coupling during urbanization has contributed to achieving the government's goals of carbon peaking by 2030 and carbon neutralization by 2060. Economic growth has been a major driver of increased carbon emissions and water use, with intensity effect helping to mitigate their growth. The decoupling between CO2 emissions and the economy has been increasing, while the coupling between water use and the economy has been strengthening. Therefore, although CCUA has partially achieved its low-carbon target, more attention should be given to water-saving strategies.
Article
Soil Science
Haocai Wang, Xinhua He, Yuejin Zhang, Junlan Xiao, Hang Wang, Mingguo Ma, Ryunosuke Tateno, Weiyu Shi
Summary: This study compares the composition and functionality of soil microbial communities between a plantation forest and a naturally restored secondary forest in a karst region in Southwest China using metagenomics and gene sequencing. The results show that fungal communities differ more than bacterial communities between the two forests. Naturally restored secondary forests have better soil fertility and microbial-mediated carbon and nitrogen cycling, which is important for selecting forest restoration approaches.
APPLIED SOIL ECOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Hongbin Wei, Zhi Song, Yurong Xie, Hongli Cheng, Huiting Yan, Fan Sun, Huajie Liu, Junlong Shen, Laigeng Li, Xinhua He, Haiyang Wang, Keming Luo
Summary: The plant vascular system is a complex network of tissues that regulate transportation and support functions throughout the plant. High temperature can affect the development of this system and lead to negative effects on crop yield and quality. However, the molecular mechanisms involved in the regulation of vascular development under high temperature are still not fully understood.
Article
Environmental Sciences
Fangcuo Qin, Junkun Lu, Zhenshuang Li, Sen Meng, Shengkun Wang, Junfeng Liang, Xinhua He
Summary: Hemiparasitic plants can affect community composition by changing nutrient cycling. The potential positive effects of hemiparasites on nutrient return to multispecies communities are not well understood.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)
Article
Environmental Sciences
Zhijie Ren, Xiaojie Han, Haoxiang Feng, Lifang Wang, Geng Ma, Junhong Li, Junjie Lv, Wenzhong Tian, Xinhua He, Yanan Zhao, Chenyang Wang
Summary: Long-term conservation tillage improves crop yields and soil stoichiometry balance, with great potential for carbon sequestration, contributing to sustainable agricultural management in rain-fed farmland.
SCIENCE OF THE TOTAL ENVIRONMENT
(2024)
Review
Plant Sciences
Xie Luo, Yining Liu, Siyue Li, Xinhua He
Summary: Arbuscular mycorrhizal fungi (AMF) form nutritional symbioses with around 80% of vascular plant species, transferring carbon (C) and nitrogen (N) from one plant to another through common AM networks (CAMNs), which promote plant coexistence and biodiversity and significantly impact global carbon and nitrogen biogeochemical cycles.
FRONTIERS IN PLANT SCIENCE
(2023)