4.8 Article

Designing Non-Native Iron-Binding Site on a Protein Cage for Biological Synthesis of Nanoparticles

期刊

SMALL
卷 10, 期 15, 页码 3131-3138

出版社

WILEY-V C H VERLAG GMBH
DOI: 10.1002/smll.201303516

关键词

-

资金

  1. Singapore Ministry of Education Academic Research Fund Tier 1 [RG33/07]

向作者/读者索取更多资源

In biomineralization processes, a supramolecular organic structure is often used as a template for inorganic nanomaterial synthesis. The E2 protein cage derived from Geobacillus stearothermophilus pyruvate dehydrogenase and formed by the self-assembly of 60 subunits, has been functionalized with non-native iron-mineralization capability by incorporating two types of iron-binding peptides. The non-native peptides introduced at the interior surface do not affect the self-assembly of E2 protein subunits. In contrast to the wild-type, the engineered E2 protein cages can serve as size-and shape-constrained reactors for the synthesis of iron nanoparticles. Electrostatic interactions between anionic amino acids and cationic iron molecules drive the formation of iron oxide nanoparticles within the engineered E2 protein cages. The work expands the investigations on nanomaterial biosynthesis using engineered host-guest encapsulation properties of protein cages.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Plant Sciences

Direct fluorescence imaging of lignocellulosic and suberized cell walls in roots and stems

Peter Kitin, Satoshi Nakaba, Christopher G. Hunt, Sierin Lim, Ryo Funada

AOB PLANTS (2020)

Article Multidisciplinary Sciences

Solid-State Protein Junctions: Cross-Laboratory Study Shows Preservation of Mechanism at Varying Electronic Coupling

Sabyasachi Mukhopadhyay, Senthil Kumar Karuppannan, Cunlan Guo, Jerry A. Fereiro, Adam Bergren, Vineetha Mukundan, Xinkai Qiu, Olga E. Castaneda Ocampo, Xiaoping Chen, Ryan C. Chiechi, Richard McCreery, Israel Pecht, Mordechai Sheves, Rupali Reddy Pasula, Sierin Lim, Christian A. Nijhuis, Ayelet Vilan, David Cahen

ISCIENCE (2020)

Article Physics, Multidisciplinary

Uncovering novel phase transitions in dense dry polar active fluids using a lattice Boltzmann method

David Nesbitt, Gunnar Pruessner, Chiu Fan Lee

Summary: The dynamics of dry active matter have important implications for a range of biological phenomena, including animal flocking, cell tissue dynamics, and swarming of insects and bacteria. Many interesting behaviors have been observed at high densities, but remain difficult to simulate due to computational demand. By modifying the lattice Boltzmann method, researchers were able to study two-dimensional dry active fluids in a dense regime, uncovering multiple novel phase transitions and supporting simulation results with analytical treatment of hydrodynamic equations.

NEW JOURNAL OF PHYSICS (2021)

Article Multidisciplinary Sciences

Regulation of biomolecular condensates by interfacial protein clusters

Andrew W. Folkmann, Andrea Putnam, Chiu Fan Lee, Geraldine Seydoux

Summary: This study reveals that the dynamics of biomolecular condensates are regulated by protein clusters. Through experiments and theory, it is demonstrated that the assembly of P granules is controlled by MEG-3 protein, which helps lower surface tension and slow down coarsening.

SCIENCE (2021)

Article Physics, Multidisciplinary

An infinite set of integral formulae for polar, nematic, and higher order structures at the interface of motility-induced phase separation

Chiu Fan Lee

Summary: Motility-induced phase separation (MIPS) is a non-equilibrium phenomenon where self-propelled particles separate into different phases without attractive interactions. It is characterized by the emergence of polar, nematic, and higher order structures at the interface, which are poorly understood. By using a model that captures all many-body interactions through effective speed and pressure functions dependent on local particle density, the study derives an infinite set of integral formulas for the ordering structures at the interface. It is shown that half of these formulas are exact for generic active Brownian particle systems and validated through numerical simulations.

NEW JOURNAL OF PHYSICS (2022)

Article Physics, Multidisciplinary

Polar Fluctuations Lead to Extensile Nematic Behavior in Confluent Tissues

Andrew Killeen, Thibault Bertrand, Chiu Fan Lee

Summary: A collection of motile cells, each generating contractile nematic stresses in isolation, can exhibit extensile nematic behavior at the tissue level, which seems contradictory. Understanding this phenomenon is crucial in biology and has fundamental significance in soft matter and many body physics.

PHYSICAL REVIEW LETTERS (2022)

Article Physics, Multidisciplinary

Incompressible Polar Active Fluids with Quenched Random Field Disorder in Dimensions d > 2

Leiming Chen, Chiu Fan Lee, Ananyo Maitra, John Toner

Summary: We present a hydrodynamic theory of incompressible polar active fluids with quenched random field disorder, showing that despite the disruption caused by the disorder, these fluids can move coherently with a non-zero mean velocity in the hydrodynamic limit. However, linearized hydrodynamics cannot describe the scaling behavior of this class of active systems in spatial dimensions between 2 and 5. Nevertheless, we obtained exact dimension-dependent scaling exponents in these dimensions.

PHYSICAL REVIEW LETTERS (2022)

Article Physics, Multidisciplinary

Packed Swarms on Dirt: Two-Dimensional Incompressible flocks with Quenched and Annealed Disorder

Leiming Chen, Chiu Fan Lee, Ananyo Maitra, John Toner

Summary: This study investigates the ordered phase of incompressible polar active fluids in the presence of quenched disorder in two dimensions. The research reveals the robustness of the ordered state and provides scaling laws. The findings have significant implications for understanding the coherent motion of biological systems.

PHYSICAL REVIEW LETTERS (2022)

Article Multidisciplinary Sciences

Heterogeneous run-and-tumble motion accounts for transient non-Gaussian super-diffusion in haematopoietic multi-potent progenitor cells

Benjamin Partridge, Sara Gonzalez Anton, Reema Khorshed, George Adams, Constandina Pospori, Cristina Lo Celso, Chiu Fan Lee

Summary: Multi-potent progenitor cells play a key role in hematopoiesis by migrating in and out of different niches to determine their fate. Our analysis of experimental data and the use of a cell motion model revealed that these cells display transient super-diffusion, highlighting the importance of motility in early hematopoietic progenitor function.

PLOS ONE (2022)

Article Physics, Multidisciplinary

Critical phenomena in compressible polar active fluids: Dynamical and functional renormalization group studies

Patrick Jentsch, Chiu Fan Lee

Summary: Active matter is a fertile ground for novel physics, and dynamic renormalization group (DRG) analysis has revealed many new universality classes in polar active fluids (PAFs). However, previous studies have been limited due to technical difficulties, and only explored compressible PAFs at the one-loop level. In this study, we use functional renormalization group (FRG) methods to overcome these limitations and uncover critical behavior in compressible PAFs, calculating critical exponents beyond the one-loop level. We find three universality classes, and show that at least two of these classes violate the fluctuation-dissipation relation, indicating they are out of equilibrium.

PHYSICAL REVIEW RESEARCH (2023)

Article Multidisciplinary Sciences

Model of inverse bleb growth explains giant vacuole dynamics during cell mechanoadaptation

Andrea Cairoli, Alice Spenlehauer, Darryl R. Overby, Chiu Fan Lee

Summary: Cells can adapt to hostile environmental conditions by dynamically changing their shape. Scientists propose that the formation of giant vacuoles can be described as inverse blebbing and model this process to explain it.

PNAS NEXUS (2023)

Article Physics, Fluids & Plasmas

Hydrodynamic theory of two-dimensional incompressible polar active fluids with quenched and annealed disorder

Leiming Chen, Chiu Fan Lee, Ananyo Maitra, John Toner

Summary: We study the moving phase of two-dimensional incompressible polar active fluids in the presence of both quenched and annealed disorder. We show that long-range polar order persists in this defect-ridden two-dimensional system. By employing three distinct dynamic renormalization group schemes, we obtain the scaling laws of velocity fluctuations at large distances and long times. Surprisingly, the quenched and annealed parts of the velocity correlation function exhibit the same anisotropy exponent and the relaxational and propagating parts of the dispersion relation have the same dynamic exponent in the nonlinear theory, despite being distinct in the linearized theory. This is attributed to anomalous hydrodynamics. Furthermore, the three renormalization schemes yield similar universal exponents, indicating the high accuracy of the numerical values predicted.

PHYSICAL REVIEW E (2022)

Article Physics, Multidisciplinary

Diversity of phase transitions and phase separations in active fluids

Thibault Bertrand, Chiu Fan Lee

Summary: By using generic hydrodynamic equations, we unify various phase transitions and phase coexistences in active fluids and identify a new coexistence phase and a multicritical point.

PHYSICAL REVIEW RESEARCH (2022)

Article Engineering, Biomedical

Graphene Quantum Dots for Fluorescent Labeling of Gelatin-Based Shear-Thinning Hydrogels

Fatemeh Nasrollahi, Farzana Nazir, Maryam Tavafoghi, Vahid Hosseini, Mohammad Ali Darabi, David Paramelle, Ali Khademhosseini, Samad Ahadian

Summary: Graphene quantum dots (GQDs) are introduced as a biocompatible and stable fluorophore for noninvasive monitoring of a physically cross-linked injectable shear-thinning biomaterial (STB) of gelatin-silicate nanoplatelets. Different STB-GQDs formulations are assessed in terms of fluorescence intensity, injectability, thermal stability, and cellular biocompatibility, with the most optimal formulation showing strong in vitro fluorescence and high thermal stability. In vivo monitoring of STB-GQDs through fluorescent imaging demonstrates robust and stable signals, highlighting their potential for long-term tracking of gelatin-based STBs.

ADVANCED NANOBIOMED RESEARCH (2021)

Article Physics, Multidisciplinary

Scaling law and universal drop size distribution of coarsening in conversion-limited phase separation

Chiu Fan Lee

Summary: Phase separation is a common phenomenon in various physical systems and biological cells. Recent experimental studies have found that the coarsening rates of intracellular condensates are unexpectedly slow, possibly due to the slow conversion of condensate constituents. Traditional theories of phase separation are no longer applicable, but the conversion-limited phase separation model can be mapped onto a grain growth model in three-dimensional materials.

PHYSICAL REVIEW RESEARCH (2021)

暂无数据