High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India

Identification of novel biomass-degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation

(2014) Hailan Piao et al.   BIOTECHNOLOGY AND BIOENGINEERING

The Futalosine Pathway Played an Important Role in Menaquinone Biosynthesis during Early Prokaryote Evolution

(2014) Xiao-Yang Zhi et al.   Genome Biology and Evolution

Genomic Standards Consortium Projects

(2014) Dawn Field et al.   Standards in Genomic Sciences

Pontibacter indicus sp. nov., isolated from hexachlorocyclohexane-contaminated soil

(2013) A. K. Singh et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects

(2013) Markus Göker et al.   Standards in Genomic Sciences

Draft Genome Sequence of Pontibacter sp. nov. BAB1700, a Halotolerant, Industrially Important Bacterium

(2012) M. N. Joshi et al.   JOURNAL OF BACTERIOLOGY

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

(2012) Konstantinos Mavromatis et al.   PLoS One

The DNA Bank Network: The Start from a German Initiative

(2011) Birgit Gemeinholzer et al.   BIOPRESERVATION AND BIOBANKING

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

(2011) I. Pagani et al.   NUCLEIC ACIDS RESEARCH

The Genomic Standards Consortium

(2011) Dawn Field et al.   PLOS BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

En route to a genome-based classification of Archaea and Bacteria?

(2010) H.-P. Klenk et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Pontibacter xinjiangensis sp. nov., in the phylum 'Bacteroidetes', and reclassification of [Effluviibacter] roseus as Pontibacter roseus comb. nov.

(2009) Y. Wang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

An Alternative Menaquinone Biosynthetic Pathway Operating in Microorganisms

(2008) T. Hiratsuka et al.   SCIENCE