标题
SeqMule: automated pipeline for analysis of human exome/genome sequencing data
作者
关键词
-
出版物
Scientific Reports
Volume 5, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-09-18
DOI
10.1038/srep14283
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- “Genotype-first” approaches on a curious case of idiopathic progressive cognitive decline
- (2014) Lingling Shi et al. BMC Medical Genomics
- Long-range PCR in next-generation sequencing: comparison of six enzymes and evaluation on the MiSeq sequencer
- (2014) Haiying Jia et al. Scientific Reports
- Harnessing virtual machines to simplify next-generation DNA sequencing analysis
- (2013) J. Nocq et al. BIOINFORMATICS
- A survey of tools for variant analysis of next-generation genome sequencing data
- (2013) S. Pabinger et al. BRIEFINGS IN BIOINFORMATICS
- DeNovoGear: de novo indel and point mutation discovery and phasing
- (2013) Avinash Ramu et al. NATURE METHODS
- Rare variant detection using family-based sequencing analysis
- (2013) G. Peng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing
- (2013) Jason O'Rawe et al. Genome Medicine
- Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community
- (2012) Konstantinos Krampis et al. BMC BIOINFORMATICS
- Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support
- (2012) Mohamed Abouelhoda et al. BMC BIOINFORMATICS
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Next-generation sequencing: impact of exome sequencing in characterizing Mendelian disorders
- (2012) Bahareh Rabbani et al. JOURNAL OF HUMAN GENETICS
- wANNOVAR: annotating genetic variants for personal genomes via the web
- (2012) Xiao Chang et al. JOURNAL OF MEDICAL GENETICS
- Detecting and annotating genetic variations using the HugeSeq pipeline
- (2012) Hugo Y K Lam et al. NATURE BIOTECHNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
- (2012) Rasmus Nielsen et al. PLoS One
- A Likelihood-Based Framework for Variant Calling and De Novo Mutation Detection in Families
- (2012) Bingshan Li et al. PLoS Genetics
- Comparative analysis of algorithms for next-generation sequencing read alignment
- (2011) M. Ruffalo et al. BIOINFORMATICS
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Galaxy CloudMan: delivering cloud compute clusters
- (2011) Enis Afgan et al. BMC BIOINFORMATICS
- CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
- (2011) Samuel V Angiuoli et al. BMC BIOINFORMATICS
- ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence
- (2011) Jose M Blanca et al. BMC GENOMICS
- Performance comparison of whole-genome sequencing platforms
- (2011) Hugo Y K Lam et al. NATURE BIOTECHNOLOGY
- Exome sequencing as a tool for Mendelian disease gene discovery
- (2011) Michael J. Bamshad et al. NATURE REVIEWS GENETICS
- Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions
- (2011) Weixin Wang et al. Scientific Reports
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- A map of human genome variation from population-scale sequencing
- (2010) Richard M. Durbin et al. NATURE
- Advances in understanding cancer genomes through second-generation sequencing
- (2010) Matthew Meyerson et al. NATURE REVIEWS GENETICS
- ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
- (2010) K. Wang et al. NUCLEIC ACIDS RESEARCH
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- SNP detection for massively parallel whole-genome resequencing
- (2009) R. Li et al. GENOME RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Applications of next-generation sequencing technologies in functional genomics
- (2008) Olena Morozova et al. GENOMICS
- The impact of next-generation sequencing technology on genetics
- (2008) Elaine R. Mardis TRENDS IN GENETICS
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now