Identifying robust communities and multi-community nodes by combining top-down and bottom-up approaches to clustering

Detecting Overlapping Protein Complexes by Rough-Fuzzy Clustering in Protein-Protein Interaction Networks

(2014) Hao Wu et al.   PLoS One

Overlapping community detection in networks

(2013) Jierui Xie et al.   ACM COMPUTING SURVEYS

Spatial and Temporal Mapping of De Novo Mutations in Schizophrenia to a Fetal Prefrontal Cortical Network

(2013) Suleyman Gulsuner et al.   CELL

Integrated Systems Approach Identifies Genetic Nodes and Networks in Late-Onset Alzheimer’s Disease

(2013) Bin Zhang et al.   CELL

Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders

(2013) C. Gaiteri et al.   GENES BRAIN AND BEHAVIOR

Mixing local and global information for community detection in large networks

(2013) Pasquale De Meo et al.   JOURNAL OF COMPUTER AND SYSTEM SCIENCES

Identification of transcriptional regulators in the mouse immune system

(2013) Vladimir Jojic et al.   NATURE IMMUNOLOGY

Structure and dynamics of molecular networks: A novel paradigm of drug discovery

(2013) Peter Csermely et al.   PHARMACOLOGY & THERAPEUTICS

Genes and pathways underlying regional and cell type changes in Alzheimer's disease

(2013) Jeremy A Miller et al.   Genome Medicine

Boolean approach to signalling pathway modelling in HGF-induced keratinocyte migration

(2012) Amit Singh et al.   BIOINFORMATICS

Cycle-by-cycle assembly of respiratory network activity is dynamic and stochastic

(2012) Michael S. Carroll et al.   JOURNAL OF NEUROPHYSIOLOGY

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

(2012) Jordi Barretina et al.   NATURE

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

Attractor Landscape Analysis Reveals Feedback Loops in the p53 Network That Control the Cellular Response to DNA Damage

(2012) M. Choi et al.   Science Signaling

A SURVEY OF CLUSTERING ENSEMBLE ALGORITHMS

(2011) SANDRO VEGA-PONS et al.   INTERNATIONAL JOURNAL OF PATTERN RECOGNITION AND ARTIFICIAL INTELLIGENCE

Rich-Club Organization of the Human Connectome

(2011) M. P. van den Heuvel et al.   JOURNAL OF NEUROSCIENCE

Functional Network Organization of the Human Brain

(2011) Jonathan D. Power et al.   NEURON

Finding Statistically Significant Communities in Networks

(2011) Andrea Lancichinetti et al.   PLoS One

Deciphering Network Community Structure by Surprise

(2011) Rodrigo Aldecoa et al.   PLoS One

Exploring the brain network: A review on resting-state fMRI functional connectivity

(2010) Martijn P. van den Heuvel et al.   EUROPEAN NEUROPSYCHOPHARMACOLOGY

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

From ‘differential expression’ to ‘differential networking’ – identification of dysfunctional regulatory networks in diseases

(2010) Alberto de la Fuente   TRENDS IN GENETICS

Impaired small-world efficiency in structural cortical networks in multiple sclerosis associated with white matter lesion load

(2009) Yong He et al.   BRAIN

Human brain networks in health and disease

(2009) Danielle S Bassett et al.   CURRENT OPINION IN NEUROLOGY

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

(2009) Raja Jothi et al.   Molecular Systems Biology

Edgetic perturbation models of human inherited disorders

(2009) Quan Zhong et al.   Molecular Systems Biology

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

Neurodegenerative Diseases Target Large-Scale Human Brain Networks

(2009) William W. Seeley et al.   NEURON

Towards real-time community detection in large networks

(2009) Ian X. Y. Leung et al.   PHYSICAL REVIEW E

Community detection algorithms: A comparative analysis

(2009) Andrea Lancichinetti et al.   PHYSICAL REVIEW E

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease

(2009) Radu Dobrin et al.   GENOME BIOLOGY

Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move

(2008) Marco Grzegorczyk et al.   MACHINE LEARNING

The Immunological Genome Project: networks of gene expression in immune cells

(2008) Tracy S P Heng et al.   NATURE IMMUNOLOGY

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH

Benchmark graphs for testing community detection algorithms

(2008) Andrea Lancichinetti et al.   PHYSICAL REVIEW E

Maps of random walks on complex networks reveal community structure

(2008) M. Rosvall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA