Analysis of key genes of jasmonic acid mediated signal pathway for defense against insect damages by comparative transcriptome sequencing

Comparative transcriptomics uncovers alternative splicing changes and signatures of selection from maize improvement

(2015) Jun Huang et al.   BMC GENOMICS

Proteomics of methyl jasmonate induced defense response in maize leaves against Asian corn borer

(2015) Yi Tong Zhang et al.   BMC GENOMICS

Temporal transcriptome changes induced by methyl jasmonate in Salvia sclarea

(2015) Da Cheng Hao et al.   GENE

Overexpression ofSpWRKY1promotes resistance toPhytophthora nicotianaeand tolerance to salt and drought stress in transgenic tobacco

(2015) Jing-bin Li et al.   PHYSIOLOGIA PLANTARUM

How salicylic acid takes transcriptional control over jasmonic acid signaling

(2015) Lotte Caarls et al.   Frontiers in Plant Science

Enhancing Plant Resistance at the Seed Stage: Low Concentrations of Methyl Jasmonate Reduce the Performance of the Leaf Miner Tuta absoluta but do not Alter the Behavior of its Predator Chrysoperla externa

(2014) Priscila Strapasson et al.   JOURNAL OF CHEMICAL ECOLOGY

Alternative Splicing and Highly Variable Cadherin Transcripts Associated with Field-Evolved Resistance of Pink Bollworm to Bt Cotton in India

(2014) Jeffrey A. Fabrick et al.   PLoS One

Priming of plant resistance by natural compounds. Hexanoic acid as a model

(2014) Paz Aranega-Bou et al.   Frontiers in Plant Science

Plant terpenes: defense responses, phylogenetic analysis, regulation and clinical applications

(2014) Bharat Singh et al.   3 Biotech

Localization of sesquiterpene formation and emission in maize leaves after herbivore damage

(2013) Tobias G Köllner et al.   BMC PLANT BIOLOGY

Transcriptional profiling of Zea mays roots reveals roles for jasmonic acid and terpenoids in resistance against Phytophthora cinnamomi

(2013) Jane Alisa Allardyce et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Evidence for the role of wheat eukaryotic translation initiation factor 3 subunit g (TaeIF3g) in abiotic stress tolerance

(2013) Brinderjit Singh et al.   GENE

Inducible expression of a fusion gene encoding two proteinase inhibitors leads to insect and pathogen resistance in transgenic rice

(2013) Jordi Quilis et al.   PLANT BIOTECHNOLOGY JOURNAL

Jasmonate signaling in plant development and defense response to multiple (a)biotic stresses

(2013) Angelo Santino et al.   PLANT CELL REPORTS

Deciphering Herbivory-Induced Gene-to-Metabolite Dynamics in Nicotiana attenuata Tissues Using a Multifactorial Approach

(2013) J. Gulati et al.   PLANT PHYSIOLOGY

European Corn Borer (Ostrinia nubilalis) Induced Responses Enhance Susceptibility in Maize

(2013) Nicole J. Dafoe et al.   PLoS One

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

(2012) Jianguo Lu et al.   BMC GENOMICS

Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement

(2012) AIMING WANG et al.   MOLECULAR PLANT PATHOLOGY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

(2012) Shihao Shen et al.   NUCLEIC ACIDS RESEARCH

Foliar herbivory triggers local and long distance defense responses in maize

(2012) Arunkanth Ankala et al.   PLANT SCIENCE

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Is the basal area of maize internodes involved in borer resistance?

(2011) Rogelio Santiago et al.   BMC PLANT BIOLOGY

Rapidly Induced Chemical Defenses in Maize Stems and Their Effects on Short-term Growth of Ostrinia nubilalis

(2011) Nicole J. Dafoe et al.   JOURNAL OF CHEMICAL ECOLOGY

Functional characterization of the three genes encoding 1-deoxy-D-xylulose 5-phosphate synthase in maize

(2011) E. Cordoba et al.   JOURNAL OF EXPERIMENTAL BOTANY

Insect oral secretions suppress wound-induced responses in Arabidopsis

(2011) Floriane Consales et al.   JOURNAL OF EXPERIMENTAL BOTANY

Inducible Maize Defense Mechanisms Against the Corn BorerSesamia nonagrioides: A Transcriptome and Biochemical Approach

(2011) Víctor M. Rodríguez et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Root herbivory: molecular analysis of the maize transcriptome upon infestation by Southern corn rootworm, Diabrotica undecimpunctata howardi

(2011) Susan D. Lawrence et al.   PHYSIOLOGIA PLANTARUM

Cell wall composition as a maize defense mechanism against corn borers

(2011) Jaime Barros-Rios et al.   PHYTOCHEMISTRY

Identity, regulation, and activity of inducible diterpenoid phytoalexins in maize

(2011) E. A. Schmelz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant volatile terpenoid metabolism: Biosynthetic genes, transcriptional regulation and subcellular compartmentation

(2010) Dinesh A. Nagegowda   FEBS LETTERS

Mass releases of Trichogramma ostriniae increase maize production in DPR Korea

(2010) F. Zhang et al.   JOURNAL OF APPLIED ENTOMOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Unbiased Transcriptional Comparisons of Generalist and Specialist Herbivores Feeding on Progressively Defenseless Nicotiana attenuata Plants

(2010) Geetha Govind et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A20/AN1 zinc-finger domain-containing proteins in plants and animals represent common elements in stress response

(2008) Shubha Vij et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Trypsin Inhibitors in Passion Fruit (Passifloraf.edulis flavicarpa) Leaves: Accumulation in Response to Methyl Jasmonate, Mechanical Wounding, and Herbivory

(2008) Sylvio Botelho-Júnior et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY