Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations

Essential Role of the ESX-5 Secretion System in Outer Membrane Permeability of Pathogenic Mycobacteria

(2015) Louis S. Ates et al.   PLoS Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Bacillus Calmette-Guérin Strain Differences Have an Impact on Clinical Outcome in Bladder Cancer Immunotherapy

(2014) Cyrill A. Rentsch et al.   EUROPEAN UROLOGY

PolyTB: A genomic variation map for Mycobacterium tuberculosis

(2014) Francesc Coll et al.   TUBERCULOSIS

Impact of in vitro evolution on antigenic diversity of Mycobacterium bovis bacillus Calmette-Guerin (BCG)

(2014) Richard Copin et al.   VACCINE

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

(2013) Philip Supply et al.   NATURE GENETICS

Genome Sequencing and Analysis of BCG Vaccine Strains

(2013) Wen Zhang et al.   PLoS One

Identification of redox-sensitive cysteines in the Arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method

(2013) Pei Liu et al.   PROTEOMICS

The Polyketide Synthase-Associated Multidrug Tolerance in Mycobacterium intracellulare Clinical Isolates

(2012) Isamu Matsunaga et al.   CHEMOTHERAPY

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

(2012) Martin T Swain et al.   Nature Protocols

A Point Mutation in cycA Partially Contributes to the D-cycloserine Resistance Trait of Mycobacterium bovis BCG Vaccine Strains

(2012) Jeffrey M. Chen et al.   PLoS One

The Influence of Bacille Calmette-Guérin Vaccine Strain on the Immune Response against Tuberculosis

(2011) Nicole Ritz et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Genomic and proteomic analyses of Mycobacterium bovis BCG Mexico 1931 reveal a diverse immunogenic repertoire against tuberculosis infection

(2011) Patricia Orduña et al.   BMC GENOMICS

Mycobacterial PE/PPE Proteins at the Host-Pathogen Interface

(2011) Samantha L. Sampson   Clinical & Developmental Immunology

Sensitivity to Isoniazid of Mycobacterium bovis BCG Strains and BCG Disseminated Disease Isolates: Table 1.

(2011) Kristopher Kolibab et al.   JOURNAL OF CLINICAL MICROBIOLOGY

CREST maps somatic structural variation in cancer genomes with base-pair resolution

(2011) Jianmin Wang et al.   NATURE METHODS

The BCG World Atlas: A Database of Global BCG Vaccination Policies and Practices

(2011) Alice Zwerling et al.   PLOS MEDICINE

BCG Vaccines: Their mechanisms of attenuation and impact on safety and protective efficacy

(2010) Jun Liu et al.   Human vaccines & immunotherapeutics

Region of Difference 2 Contributes to Virulence ofMycobacterium tuberculosis

(2010) Robert A. Kozak et al.   INFECTION AND IMMUNITY

PD-L2 induction on dendritic cells exposed to Mycobacterium avium downregulates BCG-specific T cell response

(2010) Elizabeth Mendoza-Coronel et al.   TUBERCULOSIS

TubercuList – 10 years after

(2010) Jocelyne M. Lew et al.   TUBERCULOSIS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

An Individual Patient Data Meta-Analysis of the Long-Term Outcome of Randomised Studies Comparing Intravesical Mitomycin C versus Bacillus Calmette-Guérin for Non–Muscle-Invasive Bladder Cancer

(2009) Per-Uno Malmström et al.   EUROPEAN UROLOGY

A Comprehensive Survey of Single Nucleotide Polymorphisms (SNPs) across Mycobacterium bovis Strains and M. bovis BCG Vaccine Strains Refines the Genealogy and Defines a Minimal Set of SNPs That Separate Virulent M. bovis Strains and M. bovis BCG Strains

(2009) M. C. Garcia Pelayo et al.   INFECTION AND IMMUNITY

Population Differences in Immune Responses to Bacille Calmette‐Guérin Vaccination in Infancy

(2009) Maeve K. Lalor et al.   JOURNAL OF INFECTIOUS DISEASES

Novel genome polymorphisms in BCG vaccine strains and impact on efficacy

(2008) Andrea S Leung et al.   BMC GENOMICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH