Revisiting the reference genomes of human pathogenic Cryptosporidium species: reannotation of C. parvum Iowa and a new C. hominis reference

Comparative Analysis of Field-Isolate and Monkey-Adapted Plasmodium vivax Genomes

(2015) Ernest R. Chan et al.   PLoS Neglected Tropical Diseases

Large-scale analysis of tandem repeat variability in the human genome

(2014) Jorge Duitama et al.   NUCLEIC ACIDS RESEARCH

Cryptosporidium species in humans and animals: current understanding and research needs

(2014)   PARASITOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics ofCryptosporidium

(2013) Aurélien J. Mazurie et al.   International Journal of Genomics

Comparative genome analysis of two Cryptosporidium parvum isolates with different host range

(2012) Giovanni Widmer et al.   INFECTION GENETICS AND EVOLUTION

Impact of Continuous Axenic Cultivation in Leishmania infantum Virulence

(2012) Diana Moreira et al.   PLoS Neglected Tropical Diseases

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Cryptosporidiosis in Kuwaiti children: association of clinical characteristics with Cryptosporidium species and subtypes

(2011) J. Iqbal et al.   JOURNAL OF MEDICAL MICROBIOLOGY

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

Construction and analysis of full-length cDNA library of Cryptosporidium parvum

(2011) Junya Yamagishi et al.   PARASITOLOGY INTERNATIONAL

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Treatment of cryptosporidiosis: do we know what we think we know?

(2010) Miguel M Cabada et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Quantitative comparison of different purification and detection methods for Cryptosporidium parvum oocysts

(2010) Sirri Kar et al.   VETERINARY PARASITOLOGY

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

(2010) Isheng J Tsai et al.   GENOME BIOLOGY

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution

(2009) Sonja Jaari et al.   BMC GENOMICS

Determining the protein repertoire ofCryptosporidium parvum sporozoites

(2008) Sanya J. Sanderson et al.   PROTEOMICS