4.4 Article

Characterization of the human tRNA-guanine transglycosylase: Confirmation of the heterodimeric subunit structure

期刊

RNA
卷 16, 期 5, 页码 958-968

出版社

COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT
DOI: 10.1261/rna.1997610

关键词

tRNA-guanine transglycosylase; queuine tRNA-ribosyltransferase 1; queuine tRNA-ribosyltransferase domain-containing 1; queuine; heterodimeric

向作者/读者索取更多资源

The eukaryotic tRNA-guanine transglycosylase ( TGT) has been reported to exist as a heterodimer, in contrast to the homodimeric eubacterial TGT. While ubiquitin-specific protease 14 ( USP14) has been proposed to act as a regulatory subunit of the eukaryotic TGT, the mouse TGT has recently been shown to be a queuine tRNA-ribosyltransferase 1 ( QTRT1, eubacterial TGT homolog).queuine tRNA-ribosyltransferase domain-containing 1 ( QTRTD1) heterodimer. We find that human QTRTD1 ( hQTRTD1) co-purifies with polyhistidine-tagged human QTRT1 ( ht-hQTRT1) via Ni2+ affinity chromatography. Cross-linking experiments, mass spectrometry, and size exclusion chromatography results are consistent with the two proteins existing as a heterodimer. We have not been able to observe co-purification and/or association between hQTRT1 and USP14 when co-expressed in Escherichia coli. More importantly, under our experimental conditions, the transglycosylase activity of hQTRT1 is only observed when hQTRT1 and hQTRTD1 have been co-expressed and co-purified. Kinetic characterization of the human TGT ( hQTRT1.hQTRTD1) using human tRNA(Tyr) and guanine shows catalytic efficiency (k(cat)/K-M) similar to that of the E. coli TGT. Furthermore, site-directed mutagenesis confirms that the hQTRT1 subunit is responsible for the transglycosylase activity. Taken together, these results indicate that the human TGT is composed of a catalytic subunit, hQTRT1, and hQTRTD1, not USP14. hQTRTD1 has been implicated as the salvage enzyme that generates free queuine from QMP. Work is ongoing in our laboratory to confirm this activity.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.4
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Queuine links translational control in eukaryotes to a micronutrient from bacteria

Martin Mueller, Carine Legrand, Francesca Tuorto, Vincent P. Kelly, Yaser Atlasi, Frank Lyko, Ann E. Ehrenhofer-Murray

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

Highly efficient CRISPR-targeting of the murine Hipp11 intergenic region supports inducible human transgene expression

Jill Browning, Michael Rooney, Emily Hams, Satoru Takahashi, Seiya Mizuno, Fumihiro Sugiyama, Padraic G. Fallon, Vincent P. Kelly

MOLECULAR BIOLOGY REPORTS (2020)

Article Nutrition & Dietetics

Queuine Micronutrient Deficiency Promotes Warburg Metabolism and Reversal of the Mitochondrial ATP Synthase in Hela Cells

Patti Hayes, Claire Fergus, Magda Ghanim, Cansu Cirzi, Lyubomyr Burtnyak, Callum J. McGrenaghan, Francesca Tuorto, Derek P. Nolan, Vincent P. Kelly

NUTRIENTS (2020)

Article Chemistry, Medicinal

Spiroindoline-Capped Selective HDAC6 Inhibitors: Design, Synthesis, Structural Analysis, and Biological Evaluation

A. Prasanth Saraswati, Nicola Relitti, Margherita Brindisi, Jeremy D. Osko, Giulia Chemi, Stefano Federico, Alessandro Grillo, Simone Brogi, Niamh H. McCabe, Richard C. Turkington, Ola Ibrahim, Jeffrey O'Sullivan, Stefania Lamponi, Magda Ghanim, Vincent P. Kelly, Daniela Zisterer, Rebecca Amet, Patricia Hannon Barroeta, Francesca Vanni, Cristina Ulivieri, Daniel Herp, Federica Sarno, Antonella Di Costanzo, Fulvio Saccoccia, Giovina Ruberti, Manfred Jung, Lucia Altucci, Sandra Gemma, Stefania Butini, David W. Christianson, Giuseppe Campiani

ACS MEDICINAL CHEMISTRY LETTERS (2020)

Article Biochemistry & Molecular Biology

Heterozygous disruption of ALAS1 in mice causes an accelerated age-dependent reduction in free heme, but not total heme, in skeletal muscle and liver

Koen van Wijk, Takeru Akabane, Tomohiro Kimura, Shinichi Saitoh, Satoshi Okano, Vincent P. Kelly, Michiaki Takagi, Ken Kodama, Kiwamu Takahashi, Tohru Tanaka, Motowo Nakajima, Osamu Nakajima

Summary: This study found an age-dependent reduction in free heme levels in the skeletal muscle and liver of ALAS1 heterozygous mice, while there was only a slight decrease in the liver of WT mice. Total heme levels did not show significant differences between young and aged mice. ALAS1 mRNA levels exhibited an age-dependent reduction similar to the free heme levels.

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS (2021)

Article Biochemistry & Molecular Biology

The human tRNA-guanine transglycosylase displays promiscuous nucleobase preference but strict tRNA specificity

Claire Fergus, Mashael Al-Qasem, Michelle Cotter, Ciara M. McDonnell, Emiliano Sorrentino, Franciane Chevot, Karsten Hokamp, Mathias O. Senge, John M. Southern, Stephen J. Connon, Vincent P. Kelly

Summary: Base modification can occur throughout a transfer RNA molecule, with a particular emphasis on position 34 of the anticodon loop. Human enzymes can recognize a wide range of artificial derivatives for transfer RNA incorporation, while displaying strict specificity for decoding certain codons. Exploiting the queuosine incorporation pathway shows broad potential for intentionally engineering chemical diversity into transfer RNA anticodons.

NUCLEIC ACIDS RESEARCH (2021)

Article Multidisciplinary Sciences

A non-toxic, reversibly released imaging probe for oral cancer that is derived from natural compounds

Magda Ghanim, Nicola Relitti, Gavin McManus, Stefania Butini, Andrea Cappelli, Giuseppe Campiani, K. H. Mok, Vincent P. Kelly

Summary: CD44 as an important receptor biomarker for oral cancer, the water-soluble fluorescent probe compound 1 shows promising potential for real-time intraoperative imaging due to its reversible and non-toxic nature.

SCIENTIFIC REPORTS (2021)

Article Biochemistry & Molecular Biology

CRISPR/Cas9-mediated SARM1 knockout and epitope-tagged mice reveal that SARM1 does not regulate nuclear transcription, but is expressed in macrophages

Ciara G. Doran, Ryoichi Sugisawa, Michael Carty, Fiona Roche, Claire Fergus, Karsten Hokamp, Vincent P. Kelly, Andrew G. Bowie

Summary: Investigations into the gene expression of SARM1 in macrophages have revealed its roles in neuronal degeneration and immunity. The generation of Sarm1-/- mice and epitope-tagged SARM1 mice have provided further insights into the transcriptional regulation and functional aspects of SARM1 in macrophages and neurons.

JOURNAL OF BIOLOGICAL CHEMISTRY (2021)

Article Chemistry, Medicinal

De-novo designed β-lysine derivatives can both augment and diminish the proliferation rates of E. coli through the action of Elongation Factor P

Ciara M. McDonnell, Magda Ghanim, J. Mike Southern, Vincent P. Kelly, Stephen J. Connon

Summary: This study investigates the impact of modified beta-lysines on the growth rates of eubacterial cells. The results indicate that the observed effects are due to the post translational modification of Elongation Factor P (EFP) catalyzed by PoxA. The promiscuity of PoxA allows for examination of a wide range of exogenous beta-lysines.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2022)

Article Chemistry, Medicinal

Design and synthesis of multifunctional microtubule targeting agents endowed with dual pro-apoptotic and anti-autophagic efficacy

Giuseppe Campiani, Tuhina Khan, Cristina Ulivieri, Leopoldo Staiano, Chiara Papulino, Stefania Magnano, Seema Nathwani, Anna Ramunno, Daniel Lucena-Agell, Nicola Relitti, Stefano Federico, Luca Pozzetti, Gabriele Carullo, Alice Casagni, Simone Brogi, Francesca Vanni, Paola Galatello, Magda Ghanim, Niamh McCabe, Stefania Lamponi, Massimo Valoti, Ola Ibrahim, Jeffrey O'Sullivan, Richard Turkington, Vincent P. Kelly, Ruben VanWemmel, J. Fernando Diaz, Sandra Gemma, Daniela Zisterer, Lucia Altucci, Antonella De Matteis, Stefania Butini, Rosaria Benedetti

Summary: Autophagy, a crucial mechanism for maintaining organismal homeostasis, has become a focus in cancer therapy. In this study, new multifunctional agents with both pro-apoptotic and autophagy-inhibiting effects were designed and their therapeutic potential was demonstrated through experiments.

EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY (2022)

Article Pharmacology & Pharmacy

Knockout of ABCC1 in NCI-H441 cells reveals CF to be a suboptimal substrate to study MRP1 activity in organotypic in vitro models

Johannes A. Sake, Mohammed Ali Selo, Lyubomyr Burtnyak, Henriette E. Dahnhardt, Camelia Helbet, Severin Mairinger, Oliver Langer, Vincent P. Kelly, Carsten Ehrhardt

Summary: Multidrug resistance-associated protein 1 (MRP1/ABCC1) is an efflux transporter responsible for the extrusion of endogenous substances as well as xenobiotics and their respective metabolites. The generation of an ABCC1-/- clone based on the human distal lung epithelial cell line NCI-H441 via a targeted CRISPR/Cas9 approach provides a useful tool to study MRP1 function in vitro. The ABCC1-/- NCI-H441 clone showed complete absence of mRNA and protein, and retained the ability to form electrically tight barriers.

EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES (2023)

Article Biochemistry & Molecular Biology

Structural basis of Qng1-mediated salvage of the micronutrient queuine from queuosine-5′-monophosphate as the biological substrate

Shr-Hau Hung, Gregory Elliott, Thakku R. Ramkumar, Lyubomyr Burtnyak, Callum J. McGrenaghan, Sana Alkuzweny, Samia Quaiyum, Dirk Iwata-Reuyl, Xiaobei Pan, Brian D. Green, Vincent P. Kelly, Valerie De Crecy-Lagard, Manal A. Swairjo

Summary: Eukaryotic life relies on bacteria for the biosynthesis and supply of vitamins and micronutrients, including the micronutrient queuosine. The hydrolase enzyme QNG1 plays a crucial role in releasing queuine from queuosine-5'-monophosphate, which is essential for various physiological processes associated with queuine deficiency, such as metabolism, proliferation, differentiation, and cancer progression.

NUCLEIC ACIDS RESEARCH (2023)

Article Gastroenterology & Hepatology

Disruption to tRNA Modification by Queuine Contributes to Inflammatory Bowel Disease

Jilei Zhang, Yongguo Zhang, Callum J. McGrenaghan, Vincent P. Kelly, Yinglin Xia, Jun Sun

Summary: This study found that the expression of QTRT1 was significantly downregulated in patients with inflammatory bowel disease (IBD). The 4 Q-tRNA-related tRNA synthetases were also decreased in IBD patients. These changes were associated with alterations in epithelial cell proliferation and junction formation. Further investigation revealed that queuine treatment enhanced cell proliferation and junction activity, and reduced inflammation in epithelial cells. These findings uncover a novel role for tRNA modifications in the pathogenesis of IBD.

CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY (2023)

Meeting Abstract Hematology

Haemophilic arthropathy in a novel mouse model of Haemophilia A

Aoife Yeow, Ciara Byrne, Heike Hawerkamp, Anne Chevalier, Laura Matarazzo, Jamie M. O'Sullivan, Vincent Kelly, Bagirath Gangadharan, BirgitM. Reipert, James O'Donnell, Peter Turecek, Padraic Fallon

HAEMOPHILIA (2022)

Article Chemistry, Multidisciplinary

The eukaryotic tRNA-guanine transglycosylase enzyme inserts queuine into tRNA via a sequential bi-bi mechanism

Mashael A. Alqasem, Claire Fergus, J. Mike Southern, Stephen J. Connon, Vincent P. Kelly

CHEMICAL COMMUNICATIONS (2020)

暂无数据