Comprehensive analysis of human small RNA sequencing data provides insights into expression profiles and miRNA editing

NF-kappaB-dependent MicroRNA-425 upregulation promotes gastric cancer cell growth by targeting PTEN upon IL-1β induction

(2014) Jun Ma et al.   Molecular Cancer

A-to-I editing in the miRNA seed region regulates target mRNA selection and silencing efficiency

(2014) Hideaki Kume et al.   NUCLEIC ACIDS RESEARCH

Conserved microRNA editing in mammalian evolution, development and disease

(2014) Maria Warnefors et al.   GENOME BIOLOGY

Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding

(2013) Aleksandra Helwak et al.   CELL

MicroRNAs: regulators of neuronal fate

(2013) Alfred X Sun et al.   CURRENT OPINION IN CELL BIOLOGY

miRNAs in brain development

(2013) Rebecca Petri et al.   EXPERIMENTAL CELL RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

miR-411 is up-regulated in FSHD myoblasts and suppresses myogenic factors

(2013) Naoe Harafuji et al.   Orphanet Journal of Rare Diseases

Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif

(2013) Mark P. Hamilton et al.   Nature Communications

miR-1/133a Clusters Cooperatively Specify the Cardiomyogenic Lineage by Adjustment of Myocardin Levels during Embryonic Heart Development

(2013) Katharina Wystub et al.   PLoS Genetics

Systematic identification of edited microRNAs in the human brain

(2012) S. Alon et al.   GENOME RESEARCH

Attenuated adenosine-to-inosine editing of microRNA-376a* promotes invasiveness of glioblastoma cells

(2012) Yukti Choudhury et al.   JOURNAL OF CLINICAL INVESTIGATION

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

(2012) Zhiyu Peng et al.   NATURE BIOTECHNOLOGY

miRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting

(2012) Sooyoung Cho et al.   NUCLEIC ACIDS RESEARCH

YM500: a small RNA sequencing (smRNA-seq) database for microRNA research

(2012) Wei-Chung Cheng et al.   NUCLEIC ACIDS RESEARCH

Circulating microRNAs in serum: novel biomarkers for patients with bladder cancer?

(2012) Anna-Regina Scheffer et al.   WORLD JOURNAL OF UROLOGY

Interaction of hsa-miR-381 and glioma suppressor LRRC4 is involved in glioma growth

(2011) Hailin Tang et al.   BRAIN RESEARCH

MicroRNA evolution by arm switching

(2011) Sam Griffiths-Jones et al.   EMBO REPORTS

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis

(2011) Jing Gong et al.   HUMAN MUTATION

Testis-specific miRNA-469 Up-regulated in Gonadotropin-regulated Testicular RNA Helicase (GRTH/DDX25)-null Mice Silences Transition Protein 2 and Protamine 2 Messages at Sites within Coding Region

(2011) Lisheng Dai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reduced Expression of Brain-Enriched microRNAs in Glioblastomas Permits Targeted Regulation of a Cell Death Gene

(2011) Rebecca L. Skalsky et al.   PLoS One

A-to-I editing of microRNAs: Regulating the regulators?

(2011) Willemijn M. Gommans   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Plasma Levels of Liver-Specific miR-122 Is Massively Increased in a Porcine Cardiogenic Shock Model and Attenuated by Hypothermia

(2011) Patrik Andersson et al.   SHOCK

MicroRNAs and their isomiRs function cooperatively to target common biological pathways

(2011) Nicole Cloonan et al.   GENOME BIOLOGY

MicroRNAs 130a/b are regulated by BCR-ABL and downregulate expression of CCN3 in CML

(2011) Sukanya Suresh et al.   Journal of Cell Communication and Signaling

Integrated miRNA and mRNA expression profiling of the inflammatory breast cancer subtype

(2010) I Van der Auwera et al.   BRITISH JOURNAL OF CANCER

MiRNAs as biomarkers and therapeutic targets in cancer☆

(2010) Helen M Heneghan et al.   CURRENT OPINION IN PHARMACOLOGY

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

(2010) M. J.L. de Hoon et al.   GENOME RESEARCH

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

Circulating MicroRNAs: a novel class of biomarkers to diagnose and monitor human cancers

(2010) Ke Zen et al.   MEDICINAL RESEARCH REVIEWS

Next Generation Sequencing of miRNAs – Strategies, Resources and Methods

(2010) Susanne Motameny et al.   Genes

MicroRNA 133B targets pro-survival molecules MCL-1 and BCL2L2 in lung cancer

(2009) Melissa Crawford et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

(2009) Wei-Chi Wang et al.   BMC BIOINFORMATICS

MiR-122/Cyclin G1 Interaction Modulates p53 Activity and Affects Doxorubicin Sensitivity of Human Hepatocarcinoma Cells

(2009) F. Fornari et al.   CANCER RESEARCH

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Repertoire and evolution of miRNA genes in four divergent nematode species

(2009) E. de Wit et al.   GENOME RESEARCH

Coordinate Regulation of FOXO1 by miR-27a, miR-96, and miR-182 in Breast Cancer Cells

(2009) Irene K. Guttilla et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Consensus miRNA expression profiles derived from interplatform normalization of microarray data

(2009) R. Bargaje et al.   RNA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Frequency and fate of microRNA editing in human brain

(2008) Y. Kawahara et al.   NUCLEIC ACIDS RESEARCH

MicroRNomics: a newly emerging approach for disease biology

(2008) Chunxiang Zhang   PHYSIOLOGICAL GENOMICS

MicroRNA Expression and Identification of Putative miRNA Targets in Ovarian Cancer

(2008) Neetu Dahiya et al.   PLoS One