Intermittent search strategies

Mean First-Passage Time of Surface-Mediated Diffusion in Spherical Domains

(2011) O. Bénichou et al.   JOURNAL OF STATISTICAL PHYSICS

Facilitated Diffusion of Proteins on Chromatin

(2011) O. Bénichou et al.   PHYSICAL REVIEW LETTERS

Dynamic Strategies for Target-Site Search by DNA-Binding Proteins

(2010) Mario A. Díaz de la Rosa et al.   BIOPHYSICAL JOURNAL

Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method

(2010) Vincent Tejedor et al.   BIOPHYSICAL JOURNAL

Anomalous diffusion in correlated continuous time random walks

(2010) Vincent Tejedor et al.   Journal of Physics A-Mathematical and Theoretical

Geometry-controlled kinetics

(2010) O. Bénichou et al.   Nature Chemistry

Optimal Reaction Time for Surface-Mediated Diffusion

(2010) O. Bénichou et al.   PHYSICAL REVIEW LETTERS

An end to 40 years of mistakes in DNA–protein association kinetics?

(2009) Stephen E. Halford   BIOCHEMICAL SOCIETY TRANSACTIONS

Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin

(2009) Aurélien Bancaud et al.   EMBO JOURNAL

Optimization of the residence time of a Brownian particle in a spherical subdomain

(2009) O. Bénichou et al.   JOURNAL OF CHEMICAL PHYSICS

Description of nonspecific DNA-protein interaction and facilitated diffusion with a dynamical model

(2009) Ana-Maria Florescu et al.   JOURNAL OF CHEMICAL PHYSICS

Elucidating Anomalous Protein Diffusion in Living Cells with Fluorescence Correlation Spectroscopy—Facts and Pitfalls

(2009) Nina Malchus et al.   JOURNAL OF FLUORESCENCE

Optimal intermittent search strategies

(2009) F Rojo et al.   Journal of Physics A-Mathematical and Theoretical

Facilitated diffusion in a crowded environment: from kinetics to stochastics

(2009) Yasmine Meroz et al.   Journal of Physics A-Mathematical and Theoretical

Random searching

(2009) Michael F Shlesinger   Journal of Physics A-Mathematical and Theoretical

Dynamical and spatial disorder in an intermittent search process

(2009) M Moreau et al.   Journal of Physics A-Mathematical and Theoretical

Efficient search by optimized intermittent random walks

(2009) Gleb Oshanin et al.   Journal of Physics A-Mathematical and Theoretical

Reaction kinetics in active media

(2009) C Loverdo et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Chance and strategy in search processes

(2009) M Moreau et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Optimising the success of random destructive searches: Lévy walks can outperform ballistic motions

(2009) A.M. Reynolds et al.   JOURNAL OF THEORETICAL BIOLOGY

Effects of macromolecular crowding and DNA looping on gene regulation kinetics

(2009) Gene-Wei Li et al.   Nature Physics

Directed intermittent search for hidden targets

(2009) Paul Bressloff et al.   NEW JOURNAL OF PHYSICS

Behavioral intermittence, Lévy patterns, and randomness in animal movement

(2009) F. Bartumeus   OIKOS

Robustness of optimal intermittent search strategies in one, two, and three dimensions

(2009) C. Loverdo et al.   PHYSICAL REVIEW E

Bulk-mediated surface diffusion along a cylinder: Propagators and crossovers

(2009) Aleksei V. Chechkin et al.   PHYSICAL REVIEW E

Continuous-time random walk with correlated waiting times

(2009) Aleksei V. Chechkin et al.   PHYSICAL REVIEW E

Directed intermittent search for a hidden target on a dendritic tree

(2009) Jay M. Newby et al.   PHYSICAL REVIEW E

Characterizing the human mobility pattern in a large street network

(2009) Bin Jiang et al.   PHYSICAL REVIEW E

Gated Narrow Escape Time for Molecular Signaling

(2009) Jürgen Reingruber et al.   PHYSICAL REVIEW LETTERS

Nonspecific DNA-Protein Interaction: Why Proteins Can Diffuse along DNA

(2009) Vincent Dahirel et al.   PHYSICAL REVIEW LETTERS

Quantifying Hopping and Jumping in Facilitated Diffusion of DNA-Binding Proteins

(2009) C. Loverdo et al.   PHYSICAL REVIEW LETTERS

Searching Fast for a Target on DNA without Falling to Traps

(2009) O. Bénichou et al.   PHYSICAL REVIEW LETTERS

Elucidating the Origin of Anomalous Diffusion in Crowded Fluids

(2009) Jedrzej Szymanski et al.   PHYSICAL REVIEW LETTERS

Facilitated diffusion with DNA coiling

(2009) M. A. Lomholt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Correlated continuous time random walks

(2009) Mark M. Meerschaert et al.   STATISTICS & PROBABILITY LETTERS

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

Are DNA Transcription Factor Proteins Maxwellian Demons?

(2008) Longhua Hu et al.   BIOPHYSICAL JOURNAL

How gene colocalization can be optimized by tuning the diffusion constant of transcription factors

(2008) O. Bénichou et al.   EPL

Parallel Search of Long Circular Strands: Modeling, Analysis, and Optimization†

(2008) Iddo Eliazar et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Enhanced reaction kinetics in biological cells

(2008) C. Loverdo et al.   Nature Physics

Cell commuters avoid delays

(2008) Leonid Mirny   Nature Physics

Visualizing one-dimensional diffusion of proteins along DNA

(2008) Jason Gorman et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Spatial effects on the speed and reliability of protein–DNA search

(2008) Zeba Wunderlich et al.   NUCLEIC ACIDS RESEARCH

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA

(2008) Isabelle Bonnet et al.   NUCLEIC ACIDS RESEARCH

Optimizing intermittent reaction paths

(2008) O. Bénichou et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Optimizing the encounter rate in biological interactions: Ballistic versus Lévy versus Brownian strategies

(2008) A. James et al.   PHYSICAL REVIEW E

Intermittent Brownian dynamics over a rigid strand: Heavily tailed relocation statistics in a simple geometry

(2008) P. Levitz et al.   PHYSICAL REVIEW E

Narrow-Escape Time Problem: Time Needed for a Particle to Exit a Confining Domain through a Small Window

(2008) O. Bénichou et al.   PHYSICAL REVIEW LETTERS

Steady-State Chemotaxis inEscherichia coli

(2008) Yariv Kafri et al.   PHYSICAL REVIEW LETTERS

Zero Constant Formula for First-Passage Observables in Bounded Domains

(2008) O. Bénichou et al.   PHYSICAL REVIEW LETTERS

Statistical Mechanics of Interacting Run-and-Tumble Bacteria

(2008) J. Tailleur et al.   PHYSICAL REVIEW LETTERS

Random Time-Scale Invariant Diffusion and Transport Coefficients

(2008) Y. He et al.   PHYSICAL REVIEW LETTERS

Lévy flights and superdiffusion in the context of biological encounters and random searches

(2008) G.M. Viswanathan et al.   Physics of Life Reviews

Persistent Cell Motion in the Absence of External Signals: A Search Strategy for Eukaryotic Cells

(2008) Liang Li et al.   PLoS One

Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion

(2008) G. Komazin-Meredith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Levy strategies in intermittent search processes are advantageous

(2008) M. A. Lomholt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing microscopic origins of confined subdiffusion by first-passage observables

(2008) S. Condamin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How DNA coiling enhances target localization by proteins

(2008) B. van den Broek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fractal reorientation clocks: Linking animal behavior to statistical patterns of search

(2008) F. Bartumeus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA