Anomalous transport in the crowded world of biological cells

Wanted: A Positive Control for Anomalous Subdiffusion

(2012) Michael J. Saxton   BIOPHYSICAL JOURNAL

Local Motion Analysis Reveals Impact of the Dynamic Cytoskeleton on Intracellular Subdiffusion

(2012) Marcus Otten et al.   BIOPHYSICAL JOURNAL

Enhancing phosphorylation cascades by anomalous diffusion

(2012) M. Hellmann et al.   EPL

Microscopic approach to nonlinear reaction-diffusion: The case of morphogen gradient formation

(2012) Jean Pierre Boon et al.   PHYSICAL REVIEW E

Obstructed diffusion propagator analysis for single-particle tracking

(2012) Aubrey V. Weigel et al.   PHYSICAL REVIEW E

The effect of depletion layer on diffusion of nanoparticles in solutions of flexible and polydisperse polymers

(2012) Anna Ochab-Marcinek et al.   Soft Matter

Models of anomalous diffusion in crowded environments

(2012) Igor M. Sokolov   Soft Matter

Fractional Brownian motion in crowded fluids

(2012) Dominique Ernst et al.   Soft Matter

Dynamic arrest in model porous media—intermediate scattering functions

(2012) Markus Spanner et al.   Soft Matter

Single-Particle and Ensemble Diffusivities-Test of Ergodicity

(2011) Florian Feil et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

FCS Diffusion Laws in Two-Phase Lipid Membranes: Determination of Domain Mean Size by Experiments and Monte Carlo Simulations

(2011) Cyril Favard et al.   BIOPHYSICAL JOURNAL

Near-Critical Fluctuations and Cytoskeleton-Assisted Phase Separation Lead to Subdiffusion in Cell Membranes

(2011) Jens Ehrig et al.   BIOPHYSICAL JOURNAL

Interactive, Computer-Assisted Tracking of Speckle Trajectories in Fluorescence Microscopy: Application to Actin Polymerization and Membrane Fusion

(2011) Matthew B. Smith et al.   BIOPHYSICAL JOURNAL

Hindered Diffusion in Polymeric Solutions Studied by Fluorescence Correlation Spectroscopy

(2011) Silviya P. Zustiak et al.   BIOPHYSICAL JOURNAL

Simulational study of anomalous tracer diffusion in hydrogels

(2011) Fatemeh Tabatabaei et al.   COLLOID AND POLYMER SCIENCE

Highly accelerated simulations of glassy dynamics using GPUs: Caveats on limited floating-point precision

(2011) Peter H. Colberg et al.   COMPUTER PHYSICS COMMUNICATIONS

Anomalous reaction kinetics and domain formation on crowded membranes

(2011) M. Hellmann et al.   EPL

Multiple glasses in asymmetric binary hard spheres

(2011) Th. Voigtmann   EPL

Fluorescence recovery after photobleaching on the confocal laser-scanning microscope: generalized model without restriction on the size of the photobleached disk

(2011) Nick Smisdom et al.   JOURNAL OF BIOMEDICAL OPTICS

Correlating anomalous diffusion with lipid bilayer membrane structure using single molecule tracking and atomic force microscopy

(2011) Michael J. Skaug et al.   JOURNAL OF CHEMICAL PHYSICS

Dynamic arrest of colloids in porous environments: disentangling crowding and confinement

(2011) Jan Kurzidim et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Anomalous transport of a tracer on percolating clusters

(2011) Markus Spanner et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Long-wavelength anomalies in the asymptotic behavior of mode-coupling theory

(2011) S K Schnyder et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Resonances arising from hydrodynamic memory in Brownian motion

(2011) Thomas Franosch et al.   NATURE

Direct observation of the full transition from ballistic to diffusive Brownian motion in a liquid

(2011) Rongxin Huang et al.   Nature Physics

Phase separation and near-critical fluctuations in two-component lipid membranes: Monte Carlo simulations on experimentally relevant scales

(2011) Jens Ehrig et al.   NEW JOURNAL OF PHYSICS

Correlations in a generalized elastic model: Fractional Langevin equation approach

(2011) Alessandro Taloni et al.   PHYSICAL REVIEW E

Correction-to-scaling exponent for two-dimensional percolation

(2011) Robert M. Ziff   PHYSICAL REVIEW E

In VivoAnomalous Diffusion and Weak Ergodicity Breaking of Lipid Granules

(2011) Jae-Hyung Jeon et al.   PHYSICAL REVIEW LETTERS

Ergodic and nonergodic processes coexist in the plasma membrane as observed by single-molecule tracking

(2011) A. V. Weigel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein self-diffusion in crowded solutions

(2011) F. Roosen-Runge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scale-dependent diffusion of spheres in solutions of flexible and rigid polymers: mean square displacement and autocorrelation function for FCS and DLS measurements

(2011) Anna Ochab-Marcinek et al.   Soft Matter

Brownian motion in a Maxwell fluid

(2011) Matthias Grimm et al.   Soft Matter

Dynamics of Native β-actin mRNA Transport in the Cytoplasm

(2011) Aaron W. Lifland et al.   TRAFFIC

Fluid Mechanics of Microrheology

(2010) Todd M. Squires et al.   Annual Review of Fluid Mechanics

Lipid diffusion in planar membranes investigated by fluorescence correlation spectroscopy

(2010) Radek Macháň et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Crowding Effects on Association Reactions at Membranes

(2010) Jun Soo Kim et al.   BIOPHYSICAL JOURNAL

Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method

(2010) Vincent Tejedor et al.   BIOPHYSICAL JOURNAL

Two-Dimensional Continuum Percolation Threshold for Diffusing Particles of Nonzero Radius

(2010) Michael J. Saxton   BIOPHYSICAL JOURNAL

Persistent memory for a Brownian walker in a random array of obstacles

(2010) Thomas Franosch et al.   CHEMICAL PHYSICS

Models of macromolecular crowding effects and the need for quantitative comparisons with experiment

(2010) Adrian H Elcock   CURRENT OPINION IN STRUCTURAL BIOLOGY

Localization phenomena in models of ion-conducting glass formers

(2010) J. Horbach et al.   European Physical Journal-Special Topics

Molecular dynamics studies of slow dynamics in random media: Type A-B and reentrant transitions

(2010) K. Kim et al.   European Physical Journal-Special Topics

The localization transition of the two-dimensional Lorentz model

(2010) T. Bauer et al.   European Physical Journal-Special Topics

Macromolecular dynamics in crowded environments

(2010) Carlos Echeverria et al.   JOURNAL OF CHEMICAL PHYSICS

Space-resolved dynamics of a tracer in a disordered solid

(2010) Thomas Franosch et al.   JOURNAL OF NON-CRYSTALLINE SOLIDS

Effects of Proteins on Protein Diffusion

(2010) Yaqiang Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Subdiffusive motion of a polymer composed of subdiffusive monomers

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW E

Foundation of fractional Langevin equation: Harmonization of a many-body problem

(2010) Ludvig Lizana et al.   PHYSICAL REVIEW E

Generalized Elastic Model Yields a Fractional Langevin Equation Description

(2010) Alessandro Taloni et al.   PHYSICAL REVIEW LETTERS

Diffusion-Limited Reactions in Crowded Environments

(2010) N. Dorsaz et al.   PHYSICAL REVIEW LETTERS

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW LETTERS

Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion

(2010) T. Ando et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aging and nonergodicity beyond the Khinchin theorem

(2010) S. Burov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of anomalous diffusion among crowding proteins

(2010) Margaret R. Horton et al.   Soft Matter

Anomalous transport resolved in space and time by fluorescence correlation spectroscopy

(2010) Felix Höfling et al.   Soft Matter

Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

(2010) Sean R. McGuffee et al.   PLoS Computational Biology

Particle-Tracking Microrheology of Living Cells: Principles and Applications

(2009) Denis Wirtz   Annual Review of Biophysics

Protein diffusion in crowded electrolyte solutions

(2009) Felix Roosen-Runge et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Real-Time Nanomicroscopy via Three-Dimensional Single-Particle Tracking

(2009) Yoshihiko Katayama et al.   CHEMPHYSCHEM

Slow dynamics in random media: Crossover from glass to localization transition

(2009) K. Kim et al.   EPL

Universal fluctuations in subdiffusive transport

(2009) I. M. Sokolov et al.   EPL

Elucidating Anomalous Protein Diffusion in Living Cells with Fluorescence Correlation Spectroscopy—Facts and Pitfalls

(2009) Nina Malchus et al.   JOURNAL OF FLUORESCENCE

Molecular Dynamics Simulation Study of Correlated Motions in Phospholipid Bilayer Membranes

(2009) Matthew Roark et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Lateral Diffusion of Membrane Proteins

(2009) Sivaramakrishnan Ramadurai et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Microrheology with optical tweezers

(2009) Alison Yao et al.   LAB ON A CHIP

Intracellular fluid flow in rapidly moving cells

(2009) Kinneret Keren et al.   NATURE CELL BIOLOGY

Tagged-particle dynamics in a fluid adsorbed in a disordered porous solid: Interplay between the diffusion-localization and liquid-glass transitions

(2009) V. Krakoviack   PHYSICAL REVIEW E

Persistent correlation of constrained colloidal motion

(2009) Thomas Franosch et al.   PHYSICAL REVIEW E

Ergodic properties of fractional Brownian-Langevin motion

(2009) Weihua Deng et al.   PHYSICAL REVIEW E

Viscoelastic subdiffusion: From anomalous to normal

(2009) Igor Goychuk   PHYSICAL REVIEW E

Single-Particle and Collective Slow Dynamics of Colloids in Porous Confinement

(2009) Jan Kurzidim et al.   PHYSICAL REVIEW LETTERS

Double Transition Scenario for Anomalous Diffusion in Glass-Forming Mixtures

(2009) Th. Voigtmann et al.   PHYSICAL REVIEW LETTERS

Fractional Brownian Motion Versus the Continuous-Time Random Walk: A Simple Test for Subdiffusive Dynamics

(2009) Marcin Magdziarz et al.   PHYSICAL REVIEW LETTERS

Elucidating the Origin of Anomalous Diffusion in Crowded Fluids

(2009) Jedrzej Szymanski et al.   PHYSICAL REVIEW LETTERS

Lattice Model of Diffusion-Limited Bimolecular Chemical Reactions in Confined Environments

(2009) Jeremy D. Schmit et al.   PHYSICAL REVIEW LETTERS

Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells

(2009) I. Bronstein et al.   PHYSICAL REVIEW LETTERS

Anomalous yet Brownian

(2009) B. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences

(2008) Huan-Xiang Zhou et al.   Annual Review of Biophysics

Crowding Effects on Diffusion in Solutions and Cells

(2008) James A. Dix et al.   Annual Review of Biophysics

Fluorescence correlation spectroscopy with sub-diffraction-limited resolution using near-field optical probes

(2008) Dusan Vobornik et al.   APPLIED PHYSICS LETTERS

Fluorescence correlation spectroscopy in membrane structure elucidation

(2008) Salvatore Chiantia et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Coarse-Grained Molecular Simulation of Diffusion and Reaction Kinetics in a Crowded Virtual Cytoplasm

(2008) Douglas Ridgway et al.   BIOPHYSICAL JOURNAL

On the use of Z-scan fluorescence correlation experiments on giant unilamellar vesicles

(2008) Ellen Gielen et al.   CHEMICAL PHYSICS LETTERS

Cluster-resolved dynamic scaling theory and universal corrections for transport on percolating systems

(2008) Axel Kammerer et al.   EPL

Short-time transport properties in dense suspensions: From neutral to charge-stabilized colloidal spheres

(2008) Adolfo J. Banchio et al.   JOURNAL OF CHEMICAL PHYSICS

Critical dynamics of ballistic and Brownian particles in a heterogeneous environment

(2008) Felix Höfling et al.   JOURNAL OF CHEMICAL PHYSICS

Weakly Non-Ergodic Statistical Physics

(2008) A. Rebenshtok et al.   JOURNAL OF STATISTICAL PHYSICS

Atomistic Simulations of Mixed-Lipid Bilayers in Gel and Fluid Phases

(2008) Patrick S. Coppock et al.   LANGMUIR

Diffusion and Intermembrane Distance: Case Study of Avidin and E-Cadherin Mediated Adhesion

(2008) Susanne F. Fenz et al.   LANGMUIR

Direct observation of the nanoscale dynamics of membrane lipids in a living cell

(2008) Christian Eggeling et al.   NATURE

Joint probability distributions and multipoint correlations of the continuous-time random walk

(2008) Markus Niemann et al.   PHYSICAL REVIEW E

Random-walk approach to thed-dimensional disordered Lorentz gas

(2008) Artur B. Adib   PHYSICAL REVIEW E

Internal Dynamics of Superhelical DNA

(2008) Roman Shusterman et al.   PHYSICAL REVIEW LETTERS

Stationary Fronts in anA+B→0Reaction under Subdiffusion

(2008) Daniela Froemberg et al.   PHYSICAL REVIEW LETTERS

Temporal Analysis of Active and Passive Transport in Living Cells

(2008) Delphine Arcizet et al.   PHYSICAL REVIEW LETTERS

Nonergodicity Mimics Inhomogeneity in Single Particle Tracking

(2008) Ariel Lubelski et al.   PHYSICAL REVIEW LETTERS

Anisotropic Memory Effects in Confined Colloidal Diffusion

(2008) Sylvia Jeney et al.   PHYSICAL REVIEW LETTERS

Random Time-Scale Invariant Diffusion and Transport Coefficients

(2008) Y. He et al.   PHYSICAL REVIEW LETTERS

Probing microscopic origins of confined subdiffusion by first-passage observables

(2008) S. Condamin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bad Truth about Laplace's Transform

(2008) Charles L. Epstein et al.   SIAM REVIEW

Theory of fluorescence correlation spectroscopy at variable observation area for two-dimensional diffusion on a meshgrid

(2008) Nicolas Destainville   Soft Matter

Microscopic Simulation of Membrane Molecule Diffusion on Corralled Membrane Surfaces

(2007) Anne Marie S. Niehaus et al.   BIOPHYSICAL JOURNAL

Long-Range Nonanomalous Diffusion of Quantum Dot-Labeled Aquaporin-1 Water Channels in the Cell Plasma Membrane

(2007) Jonathan M. Crane et al.   BIOPHYSICAL JOURNAL

A Biological Interpretation of Transient Anomalous Subdiffusion. II. Reaction Kinetics

(2007) Michael J. Saxton   BIOPHYSICAL JOURNAL

Lateral Diffusion of Proteins in the Plasma Membrane:  Spatial Tessellation and Percolation Theory

(2007) Bong June Sung et al.   JOURNAL OF PHYSICAL CHEMISTRY B