Two-photon imaging and analysis of neural network dynamics

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing

(2011) Adrian Cheng et al.   NATURE METHODS

Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens

(2011) Benjamin F. Grewe et al.   Biomedical Optics Express

Sparse and powerful cortical spikes

(2010) Jason Wolfe et al.   CURRENT OPINION IN NEUROBIOLOGY

Optical Recording of Neuronal Spiking Activity From Unbiased Populations of Neurons With High Spike Detection Efficiency and High Temporal Precision

(2010) Gayathri N. Ranganathan et al.   JOURNAL OF NEUROPHYSIOLOGY

Automatic Identification of Fluorescently Labeled Brain Cells for Rapid Functional Imaging

(2010) Ilya Valmianski et al.   JOURNAL OF NEUROPHYSIOLOGY

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

Regression-Based Identification of Behavior-Encoding Neurons During Large-Scale Optical Imaging of Neural Activity at Cellular Resolution

(2010) Andrew Miri et al.   JOURNAL OF NEUROPHYSIOLOGY

Diverse Voltage-Sensitive Dyes Modulate GABAAReceptor Function

(2010) S. Mennerick et al.   JOURNAL OF NEUROSCIENCE

In vivoCa2+imaging of dorsal horn neuronal populations in mouse spinal cord

(2010) Helge C. Johannssen et al.   JOURNAL OF PHYSIOLOGY-LONDON

Sparse coding and high-order correlations in fine-scale cortical networks

(2010) Ifije E. Ohiorhenuan et al.   NATURE

Dendritic organization of sensory input to cortical neurons in vivo

(2010) Hongbo Jia et al.   NATURE

Lateral competition for cortical space by layer-specific horizontal circuits

(2010) Hillel Adesnik et al.   NATURE

Olfactory pattern classification by discrete neuronal network states

(2010) Jörn Niessing et al.   NATURE

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice

(2010) Takaki Komiyama et al.   NATURE

Optogenetics

(2010) Karl Deisseroth   NATURE METHODS

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Imaging brain electric signals with genetically targeted voltage-sensitive fluorescent proteins

(2010) Walther Akemann et al.   NATURE METHODS

Functional organization and population dynamics in the mouse primary auditory cortex

(2010) Gideon Rothschild et al.   NATURE NEUROSCIENCE

A genetically targeted optical sensor to monitor calcium signals in astrocyte processes

(2010) Eiji Shigetomi et al.   NATURE NEUROSCIENCE

Dichotomy of functional organization in the mouse auditory cortex

(2010) Sharba Bandyopadhyay et al.   NATURE NEUROSCIENCE

Functional imaging of hippocampal place cells at cellular resolution during virtual navigation

(2010) Daniel A Dombeck et al.   NATURE NEUROSCIENCE

Broadly Tuned Response Properties of Diverse Inhibitory Neuron Subtypes in Mouse Visual Cortex

(2010) Aaron M. Kerlin et al.   NEURON

A compact acousto-optic lens for 2D and 3D femtosecond based 2-photon microscopy

(2010) Paul A. Kirkby et al.   OPTICS EXPRESS

Decorrelated Neuronal Firing in Cortical Microcircuits

(2010) A. S. Ecker et al.   SCIENCE

Activity Correlation Imaging: Visualizing Function and Structure of Neuronal Populations

(2009) Stephan Junek et al.   BIOPHYSICAL JOURNAL

Inhibition in cortical circuits

(2009) Rodney J. Douglas et al.   CURRENT BIOLOGY

Electrophysiological recordings from behaving animals—going beyond spikes

(2009) Edith Chorev et al.   CURRENT OPINION IN NEUROBIOLOGY

Optical probing of neuronal ensemble activity

(2009) Benjamin F Grewe et al.   CURRENT OPINION IN NEUROBIOLOGY

Activity of Hb9 Interneurons during Fictive Locomotion in Mouse Spinal Cord

(2009) A. C. Kwan et al.   JOURNAL OF NEUROSCIENCE

Functional Clustering of Neurons in Motor Cortex Determined by Cellular Resolution Imaging in Awake Behaving Mice

(2009) D. A. Dombeck et al.   JOURNAL OF NEUROSCIENCE

A micro-architecture for binocular disparity and ocular dominance in visual cortex

(2009) Prakash Kara et al.   NATURE

A genetically encoded reporter of synaptic activity in vivo

(2009) Elena Dreosti et al.   NATURE METHODS

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

(2009) Lin Tian et al.   NATURE METHODS

Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation

(2009) Srinivas C. Turaga et al.   NEURAL COMPUTATION

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

(2009) Eran A. Mukamel et al.   NEURON

Motor Behavior Activates Bergmann Glial Networks

(2009) Axel Nimmerjahn et al.   NEURON

Representations of Odor in the Piriform Cortex

(2009) Dan D. Stettler et al.   NEURON

Two-photon microscopy with simultaneous standard and extended depth of field using a tunable acoustic gradient-index lens

(2009) Nicolas Olivier et al.   OPTICS LETTERS

Sparsification of neuronal activity in the visual cortex at eye-opening

(2009) N. L. Rochefort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Visually evoked activity in cortical cells imaged in freely moving animals

(2009) J. Sawinski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Invited Review Article: Imaging techniques for harmonic and multiphoton absorption fluorescence microscopy

(2009) Ramón Carriles et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Genetically Encoded Calcium Indicators

(2008) Marco Mank et al.   CHEMICAL REVIEWS

Fast and Accurate Detection of Action Potentials From Somatic Calcium Fluctuations

(2008) Takuya Sasaki et al.   JOURNAL OF NEUROPHYSIOLOGY

Identification and Clustering of Event Patterns From In Vivo Multiphoton Optical Recordings of Neuronal Ensembles

(2008) Ilker Ozden et al.   JOURNAL OF NEUROPHYSIOLOGY

Optical monitoring of neuronal activity at high frame rate with a digital random-access multiphoton (RAMP) microscope

(2008) Yo Otsu et al.   JOURNAL OF NEUROSCIENCE METHODS

Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution

(2008) Kyle P. Lillis et al.   JOURNAL OF NEUROSCIENCE METHODS

Automated correction of fast motion artifacts for two-photon imaging of awake animals

(2008) David S. Greenberg et al.   JOURNAL OF NEUROSCIENCE METHODS

Axon tracking in serial block-face scanning electron microscopy

(2008) Elizabeth Jurrus et al.   MEDICAL IMAGE ANALYSIS

Adaptive coding of visual information in neural populations

(2008) Diego A. Gutnisky et al.   NATURE

Internal brain state regulates membrane potential synchrony in barrel cortex of behaving mice

(2008) James F. A. Poulet et al.   NATURE

Experience with moving visual stimuli drives the early development of cortical direction selectivity

(2008) Ye Li et al.   NATURE

Single-spike detection in vitro and in vivo with a genetic Ca2+ sensor

(2008) Damian J Wallace et al.   NATURE METHODS

A genetically encoded calcium indicator for chronic in vivo two-photon imaging

(2008) Marco Mank et al.   NATURE METHODS

Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity

(2008) Gaddum Duemani Reddy et al.   NATURE NEUROSCIENCE

Instantaneous correlation of excitation and inhibition during ongoing and sensory-evoked activities

(2008) Michael Okun et al.   NATURE NEUROSCIENCE

Imaging in vivo: watching the brain in action

(2008) Jason N. D. Kerr et al.   NATURE REVIEWS NEUROSCIENCE

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

(2008)   NATURE REVIEWS NEUROSCIENCE

Fast Three-Dimensional Fluorescence Imaging of Activity in Neural Populations by Objective-Coupled Planar Illumination Microscopy

(2008) Terrence F. Holekamp et al.   NEURON

Genetic Dissection of Neural Circuits

(2008) Liqun Luo et al.   NEURON

A spatio-temporally compensated acousto-optic scanner for two-photon microscopy providing large field of view

(2008) Y. Kremer et al.   OPTICS EXPRESS

Characterization and Subcellular Targeting of GCaMP-Type Genetically-Encoded Calcium Indicators

(2008) Tianyi Mao et al.   PLoS One

Delayed plasticity of inhibitory neurons in developing visual cortex

(2008) S. P. Gandhi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo two-photon voltage-sensitive dye imaging reveals top-down control of cortical layers 1 and 2 during wakefulness

(2008) B. Kuhn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SLM microscopy: scanless two-photon imaging and photostimulation using spatial light modulators

(2008) Volodymyr Nikolenko   Frontiers in Neural Circuits

Sparse Representation of Sounds in the Unanesthetized Auditory Cortex

(2008) Tomáš Hromádka et al.   PLOS BIOLOGY