DNA curvature and flexibility in vitro and in vivo

Monovalent Cation Binding in the Minor Groove of DNA A-Tracts†

(2009) Qian Dong et al.   BIOCHEMISTRY

Enhancement of DNA Flexibility in Vitro and in Vivo by HMGB Box A Proteins Carrying Box B Residues†

(2009) Nadia T. Sebastian et al.   BIOCHEMISTRY

Probing the Conformational Distributions of Subpersistence Length DNA

(2009) Alexander J. Mastroianni et al.   BIOPHYSICAL JOURNAL

High Local Concentration: A Fundamental Strategy of Life

(2009) Stefan Oehler et al.   JOURNAL OF MOLECULAR BIOLOGY

Counterion Atmosphere and Hydration Patterns near a Nucleosome Core Particle

(2009) Christopher K. Materese et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber

(2009) Maarten Kruithof et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles

(2009) Davide Demurtas et al.   NUCLEIC ACIDS RESEARCH

In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

(2009) Graham L. Randall et al.   NUCLEIC ACIDS RESEARCH

A translational signature for nucleosome positioning in vivo

(2009) Micaela Caserta et al.   NUCLEIC ACIDS RESEARCH

Local and global effects of strong DNA bending induced during molecular dynamics simulations

(2009) Jeremy Curuksu et al.   NUCLEIC ACIDS RESEARCH

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures

(2009) G. Zheng et al.   NUCLEIC ACIDS RESEARCH

Concentration and Length Dependence of DNA Looping in Transcriptional Regulation

(2009) Lin Han et al.   PLoS One

Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome

(2009) S. C. J. Parker et al.   SCIENCE

VIROLOGY: Pressurized Viruses

(2009) W. M. Gelbart et al.   SCIENCE

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Enhanced DNA dynamics due to cationic reagents, topological states of dsDNA and high mobility group box 1 as probed by PicoGreen

(2008) Sunil K. Noothi et al.   FEBS Journal

Effects of the Nucleoid Protein HU on the Structure, Flexibility, and Ring-Closure Properties of DNA Deduced from Monte Carlo Simulations

(2008) Luke Czapla et al.   JOURNAL OF MOLECULAR BIOLOGY

DNA on a Tube: Electrostatic Contribution to Stiffness†

(2008) Zuojun Guo et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Estimation of the Persistence Length of DNA from the Torsion Elastic Constant and Supercoiling Free Energy: Effect of Ethylene Glycol

(2008) David P. Rangel et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

High-resolution circular chromosome conformation capture assay

(2008) Anita Göndör et al.   Nature Protocols

Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation

(2008) Nicole A. Becker et al.   NUCLEIC ACIDS RESEARCH

Supercoiling and Denaturation of DNA Loops

(2008) T. B. Liverpool et al.   PHYSICAL REVIEW LETTERS

Conformation of Circular DNA in Two Dimensions

(2008) Guillaume Witz et al.   PHYSICAL REVIEW LETTERS

Remeasuring the Double Helix

(2008) R. S. Mathew-Fenn et al.   SCIENCE

Interconvertible Lac Repressor–DNA Loops Revealed by Single-Molecule Experiments

(2008) Oi Kwan Wong et al.   PLOS BIOLOGY

Monovalent Cation Binding by Curved DNA Molecules Containing Variable Numbers of A-Tracts

(2007) Yongjun Lu et al.   BIOPHYSICAL JOURNAL