Article
Chemistry, Multidisciplinary
Kyle A. Mason, Adam C. Pearcy, Zachary A. Christensen, Isaac K. Attah, Michael Meot-Ner (mautner), M. Samy El-Shall
Summary: The stepwise hydration of the benzonitrile radical cation with water molecules has been investigated, revealing the formation of a new class of clusters.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2022)
Article
Chemistry, Multidisciplinary
Sangmin Kim, Junho Kim, Hongyu Zhong, Grace B. Panetti, Paul J. Chirik
Summary: The synthesis of a piano-stool ruthenium hydride with dual catalytic functions is described. The addition of a neutral supporting ligand successfully prevents a deleterious reaction pathway. The ruthenium hydride is an effective catalyst for various reactions.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2022)
Article
Chemistry, Physical
Raul Rodriguez-Segundo, Alfonso Gijon, Rita Prosmiti
Summary: In this study, we investigate the structures and energetics of poly-hydrated halides using first-principles polarizable halide-water potentials. We find that the behavior of the clusters varies depending on the halide anion, but in general, the anion prefers to be connected to the outer shell of the water molecule arrangements. We also observe that nuclear quantum effects affect certain structural properties and show promising trends in the cluster size.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2022)
Article
Chemistry, Multidisciplinary
Conner C. Harper, Daniel D. Brauer, Matthew B. Francis, Evan R. Williams
Summary: This study used charge detection mass spectrometry to dynamically monitor the mass and charge of individual aqueous nanodrops in a size range relevant to gaseous macromolecular ion formation. The results showed the first direct observation of ion emission from aqueous nanodrops in late stages of droplet evaporation, which is important for understanding macromolecular ion formation.
Article
Construction & Building Technology
Florian Kleiner, Christian Matthes, Christiane Roessler
Summary: This study compared argon broad ion beam (BIB) sectioning with state-of-the-art sample preparation methods for hydrated alite in order to quantify pore size distributions in hardened pastes. It investigated the benefits of sample cooling during BIB to avoid deterioration of cement hydrates, and demonstrated the quantitative analysis of pores as small as 5 nm in hydrated alite pastes through image analysis.
CEMENT AND CONCRETE RESEARCH
(2021)
Article
Chemistry, Physical
Wilberth A. Narvaez, Eric C. Wu, Sanghyun J. Park, Mariah Gomez, Benjamin J. Schwartz
Summary: By using ultrafast spectroscopy and molecular dynamics simulations, the localization dynamics of excess electrons in aqueous NaCl solutions are investigated. The results show that the electrons prefer to localize at pre-existing trap sites, and the presence of concentrated electrolytes has little impact on the localization behavior.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2022)
Article
Biochemical Research Methods
Xiaoyue Yang, Yu Xia
Summary: A photochemical reduction system was developed and incorporated into an LC-MS system for bottom-up protein analysis, allowing for reduction of disulfide bonds in peptides with multiple disulfide linkages. The method improved sequence coverage and facilitated disulfide connectivity determination.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2021)
Article
Chemistry, Physical
Nikolay Tkachenko, Anastasiia A. Tkachenko, Vladimir A. Kulyukin, Alexander Boldyrev
Summary: Investigation of the process of NO3- anion solvation using particle swarm optimization technique and density functional theory revealed the crucial role of charge transfer in the stabilization of species. At low concentrations, NO3- species tend to be located on the surface of water solution, while contact ion pair K+-NO3- undergoes rapid dissociation. This could result in oppositely signed concentration gradients for NO3- and K+ ions in a thin water film.
JOURNAL OF PHYSICAL CHEMISTRY A
(2021)
Article
Chemistry, Physical
Mateus Bergami, Andre L. D. Santana, Jorge Charry Martinez, Andres Reyes, Kaline Coutinho, Marcio T. do N. Varella
Summary: The study proposed a model for solvated positronium (Ps) atoms in water based on the s-QM/MM protocol, which is applicable to other liquids and materials. The results indicate similarities between the solvation of Ps and noble gas atoms, as well as hydrophobic solutes forming clathrate structures.
JOURNAL OF PHYSICAL CHEMISTRY B
(2022)
Article
Chemistry, Physical
Sapir Willdorf-Cohen, Alexander Kaushansky, Dario R. Dekel, Charles E. Diesendruck
Summary: Solvent molecules have a significant impact on chemical reactions, especially when they interact with reactants or catalysts. This study demonstrates that microsolvation of water can change the chemoselectivity of hydroxide ions by affecting their basicity and nucleophilicity differently.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2022)
Article
Chemistry, Physical
Sapir Willdorf-Cohen, Alexander Kaushansky, Dario R. Dekel, Charles E. Diesendruck
Summary: This study discusses the impact of solvent molecules on chemical reactions, particularly through the electronic interactions in ion microsolvation. Using the reaction between hydroxide and quaternary ammonium salts as an example, it demonstrates how water microsolvation can alter the chemical selectivity of hydroxide. The reactivity of hydroxide as a base is more affected by water microsolvation than its reactivity as a nucleophile.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2022)
Article
Chemistry, Physical
Qinqin Yuan, Lidia Chomicz-Manka, Samanta Makurat, Wenjin Cao, Janusz Rak, Xue-Bin Wang
Summary: This study systematically investigates the electronic and geometric structures of four doubly deprotonated DNA building blocks, providing valuable insights into the mechanism of oxidative DNA damage. The results enhance the understanding of the basic building blocks of DNA at the molecular level, completing the depiction of nucleotides in various charge states.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS
(2021)
Article
Chemistry, Physical
Ephrem G. Demissie, Wing Ka Lam, Hayden Thompson, Wai Kit Tang, Chi-Kit Siu
Summary: This study demonstrates that in the presence of water molecules, metal-catalyzed N2O decomposition may not necessarily start from an O-bound metal complex, but can also occur from an N-bound structure.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2021)
Article
Microscopy
Daniel J. Merryweather, Nicola Weston, Jordan Roe, Christopher Parmenter, Mark P. Lewis, Paul Roach
Summary: Collagen hydrogels have wide applications in bioengineering and soft material engineering, particularly in medical therapeutics, medical devices, and biosensors. However, studying the microstructure of collagen gels is challenging due to the relationship between hydration and molecular organization. Robust sample preparation and handling protocols are needed to visualize and explore the microscale organization of collagen hydrogels.
JOURNAL OF MICROSCOPY
(2023)
Article
Physics, Atomic, Molecular & Chemical
Fan Yang, Rebecca Coates, Georgia C. Boles, P. B. Armentrout
Summary: Experimental hydration energies of Mn2+(H2O)(x) complexes (x=4-9) were determined using threshold collision-induced dissociation (TCID) with Xe. The results were compared with theoretical values, showing reasonable agreement.
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
(2021)
Editorial Material
Biophysics
Andrea Angeli, Fabrizio Carta, Alessio Nocentini, Jean-Yves Winum, Raivis Zalubovskis, Valentina Onnis, Wagdy M. Eldehna, Clemente Capasso, Simone Carradori, William A. Donald, Shoukat Dedhar, Claudiu T. Supuran
BIOPHYSICAL JOURNAL
(2021)
Article
Chemistry, Physical
Xianjue Chen, Karin Ching, Aditya Rawal, Douglas J. Lawes, Mohammad Tajik, William A. Donald, Chuan Zhao, Sun Hwa Lee, Rodney S. Ruoff
Summary: A novel intercalated film has been developed through ion exchange, showing excellent stability in water and organic solvents, and demonstrating significantly faster water vapor and liquid water permeation rates compared to graphene oxide membranes.
Article
Chemistry, Medicinal
Jessica Kho, P. Chi Pham, Suhyeon Kwon, Alana Y. Huang, Joel P. Rivers, Huixin Wang, Heath Ecroyd, W. Alexander Donald, Shelli R. McAlpine
Summary: This study presents the development of small molecule peptides derived from the N-terminal sequence of Hsp27 protein, demonstrating the ability to directly regulate protein aggregation, offering a new approach for drug development in controlling protein aggregation.
ACS MEDICINAL CHEMISTRY LETTERS
(2021)
Review
Chemistry, Multidisciplinary
Jack L. Bennett, Giang T. H. Nguyen, William A. Donald
Summary: Native mass spectrometry is a powerful method for studying protein-small molecule interactions in drug discovery, providing unique insights into diverse biomolecular systems. This review highlights the applications of native MS in studying small molecule-protein interactions and discusses the quantification of binding properties and structural analysis techniques. Future developments and potential applications of native MS in drug discovery workflows are also discussed.
Article
Chemistry, Analytical
K. M. Mohibul Kabir, Ezaz Ahmed, William A. Donald
Summary: Differential ion mobility (DMS) is a versatile method for ion separation integrated with mass spectrometry (MS). A study proposes an integrated DMS-MS interface concept consisting of a slit electrode and an atmospheric pressure ion funnel (APIF) to improve sensitivity and resolution by enhancing ion transmission efficiency and restricting ion dispersion.
Article
Chemistry, Multidisciplinary
Aaron D. W. Kennedy, Ray G. DiNardi, Lucy L. Fillbrook, William A. Donald, Jonathon E. Beves
Summary: A study has shown that a photoswitchable ligand and palladium(II) ions can form dynamic metallosupramolecular structures. By irradiating with light, the distribution of isomers in the ligand can be controlled, resulting in selective disassembly and formation of stable structures. This approach provides a new strategy for reversible control of self-assembled structures.
CHEMISTRY-A EUROPEAN JOURNAL
(2022)
Article
Chemistry, Physical
Matthew N. Podgorski, Joshua S. Harbort, Joel H. Z. Lee, Giang T. H. Nguyen, John B. Bruning, William A. Donald, Paul Bernhardt, Jeffrey R. Harmer, Stephen G. Bell
Summary: In this study, it was found that mutating a highly conserved threonine residue in CYP199A4 to glutamate can convert it to a peroxygenase and improve its peroxygenase activity. The crystal structure of the mutant demonstrated a change in spin state upon substrate binding, which was linked to the modification of the oxygen-binding groove and the retention of the iron-bound aqua ligand. The detailed characterization of this engineered heme peroxygenase will aid in the development of new methods for the selective C-H bond activation using heme enzymes.
Article
Chemistry, Multidisciplinary
Qinwen Liu, Ezaz Ahmed, K. M. Mohibul Kabir, Xiaojing Huang, Dan Xiao, John Fletcher, William A. Donald
Summary: Pulsed nanoESI-MS using nanoscale emitters can improve the performance of intact protein detection, with increased ion abundances and decreased noise compared to conventional methods. Optimal repetition rates significantly enhance the signal levels for proteins.
APPLIED SCIENCES-BASEL
(2021)
Article
Chemistry, Analytical
Jordan Mastellone, K. M. Mohibul Kabir, Xiaojing Huang, William A. Donald
Summary: A study found that high-resolution differential ion mobility-mass spectrometry (DMS-MS) can separate and detect isomers of glycans, which play important roles in metabolism, structure, and cell-to-cell signaling. DMS improves resolution and can be used to separate composition, configuration, and connectivity isomers. This is useful for improving the characterization of glycans and glycosylated biomolecules.
ANALYTICA CHIMICA ACTA
(2022)
Review
Biotechnology & Applied Microbiology
Mohammad Tajik, Mahroo Baharfar, William A. Donald
Summary: Recent advances in mass spectrometry (MS) have allowed for the measurement of multiple molecules in single cells. This is crucial for understanding the molecular heterogeneity and function of individual cells. In this review, we discuss different methods of single-cell MS, including high-throughput, targeted, mass cytometry-based approaches, and antibody-free methods, for detailed profiling of the proteome and metabolome of single cells. We also explore the advantages and disadvantages of these methods and the challenges and opportunities for further improvements in single-cell MS. These methods have found applications in biomedical research, such as revealing tumor heterogeneity and conducting high-content drug screening.
TRENDS IN BIOTECHNOLOGY
(2022)
Article
Chemistry, Multidisciplinary
Ray G. DiNardi, Anna O. Douglas, Ruoming Tian, Jason R. Price, Mohammad Tajik, William A. Donald, Jonathon E. Beves
Summary: A photoswitchable ligand based on azobenzene is self-assembled with palladium(II) ions to form a [Pd-2(E-L)(4)](4+) cage. Irradiation with 470 nm light results in the nearly complete transformation to a monomeric species [Pd(Z-L)(2)](2+), which can be reversed by irradiation with 405 nm light or heat. Self-assembly significantly improves the photoswitching selectivity and extends the thermal stability.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Review
Chemistry, Analytical
K. M. Mohibul Kabir, Merryn J. Baker, William A. Donald
Summary: This article critically reviews the major advances in metabolomics for early-stage cancer detection by sampling volatile organic compounds in breath and bodily fluids. The operating principles and challenges of different sensing methods are discussed, as well as future research directions for widespread clinical usage.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Analytical
J. Diana Zhang, Minh N. Le, Kathryn J. Hill, Antony A. Gopper, Richard M. Stuetz, William A. Donald
Summary: Sebum from sebaceous glands is a rich source of volatile organic compounds (VOCs) that can be sampled non-invasively from the skin surface. However, there is a need to establish the effects of sampling approaches and environmental factors on sebum VOC profiles. In this study, a more standardized skin swab sampling approach was investigated, and the impact of sampling materials and preparatory conditions on VOC profiles was assessed using thermal desorption-gas chromatography-mass spectrometry (TD-GC-MS). The study highlights the importance of rigorous controls in sebum sampling and provides recommendations for future research.
ANALYTICA CHIMICA ACTA
(2022)
Article
Chemistry, Analytical
Susannah L. Brown, Muhammad A. Zenaidee, Joseph A. Loo, Rachel R. Ogorzalek Loo, William A. Donald
Summary: Theta capillary nanoelectrospray ionization (theta-nanoESI) can be used to supercharge protein ions directly from solution for detection by mass spectrometry (MS). The mechanism for theta-nanoESI mixing has been reported to primarily occur via droplet fusion rather than in the Taylor cone prior to ESI droplet formation. This method allows for the formation of highly charged protein ions with more elongated structures.
ANALYTICAL CHEMISTRY
(2022)
Article
Biochemistry & Molecular Biology
Xiaojing Huang, Daniel Winter, Dominic. J. J. Glover, Claudiu. T. T. Supuran, William. A. A. Donald
Summary: Carbonic anhydrases (CAs) are metalloenzymes that play important roles in cellular processes and have been implicated in various diseases. Phosphorylation, a common post-translational modification of CAs, can significantly impact their catalytic activity and drug-binding capabilities. This study highlights the potential regulatory role of phosphorylation in CA activity and its effect on small molecule drug binding.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)