Bringing proteomics into the clinic: The need for the field to finally take itself seriously

Proteomics of Pyrococcus furiosus (Pfu): Identification of Extracted Proteins by Three Independent Methods

(2013) Catherine C. L. Wong et al.   JOURNAL OF PROTEOME RESEARCH

PRIDE Cluster: building a consensus of proteomics data

(2013) Johannes Griss et al.   NATURE METHODS

QuaMeter: Multivendor Performance Metrics for LC–MS/MS Proteomics Instrumentation

(2012) Ze-Qiang Ma et al.   ANALYTICAL CHEMISTRY

SIMPATIQCO: A Server-Based Software Suite Which Facilitates Monitoring the Time Course of LC–MS Performance Metrics on Orbitrap Instruments

(2012) Peter Pichler et al.   JOURNAL OF PROTEOME RESEARCH

Updating JPROT's publication standards for large-scale proteomic studies: Towards hypothesis-driven interpretation of predictive biological models

(2012) Juan J. Calvete   Journal of Proteomics

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome

(2012) Young-Ki Paik et al.   NATURE BIOTECHNOLOGY

Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics

(2011) Julia Maria Burkhart et al.   Journal of Proteomics

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Confident Phosphorylation Site Localization Using the Mascot Delta Score

(2010) Mikhail M. Savitski et al.   MOLECULAR & CELLULAR PROTEOMICS

Mass spectrometry in high-throughput proteomics: ready for the big time

(2010) Tommy Nilsson et al.   NATURE METHODS

Automated diagnosis of LC-MS/MS performance

(2009) Hua Xu et al.   BIOINFORMATICS

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance

(2009) Amanda G. Paulovich et al.   MOLECULAR & CELLULAR PROTEOMICS

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses

(2009) Paul A. Rudnick et al.   MOLECULAR & CELLULAR PROTEOMICS

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

(2009) Terri A Addona et al.   NATURE BIOTECHNOLOGY

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

(2008) Lyris M. F. de Godoy et al.   NATURE

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE